View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1307_low_4 (Length: 649)

Name: NF1307_low_4
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1307_low_4
NF1307_low_4
[»] chr7 (2 HSPs)
chr7 (83-525)||(1632582-1633024)
chr7 (507-620)||(1632452-1632565)
[»] chr8 (1 HSPs)
chr8 (88-234)||(26657132-26657278)
[»] chr3 (3 HSPs)
chr3 (91-234)||(10996778-10996920)
chr3 (17-76)||(43999896-43999955)
chr3 (88-182)||(1051916-1052010)
[»] scaffold0291 (1 HSPs)
scaffold0291 (85-197)||(15934-16046)
[»] chr1 (2 HSPs)
chr1 (83-134)||(43022107-43022158)
chr1 (85-150)||(12630382-12630447)
[»] scaffold0013 (1 HSPs)
scaffold0013 (85-183)||(99218-99316)
[»] chr6 (4 HSPs)
chr6 (87-167)||(30491953-30492033)
chr6 (88-187)||(31634720-31634819)
chr6 (88-182)||(13565415-13565509)
chr6 (97-158)||(14640691-14640752)
[»] scaffold0012 (1 HSPs)
scaffold0012 (88-187)||(51815-51914)
[»] scaffold0911 (1 HSPs)
scaffold0911 (88-187)||(2837-2936)
[»] scaffold0437 (1 HSPs)
scaffold0437 (97-158)||(7367-7428)


Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 83 - 525
Target Start/End: Complemental strand, 1633024 - 1632582
Alignment:
Q  83 gctgttgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacatt 182  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1633024 gctgttgcttcttggacaatacttgcgtaaaactttcatccgccgtccgttggtcatattcacaaatacgagcccataaatccaagtctctctggacatt 1632925  T
Q  183 ttttgaaacctgaacatcttggtgctgagcaggaaaaacacgcacaggagcaatattttcatgtataatctgaacttctattttgttactcacatttttt 282  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  1632924 ttttgagacctgaacatcttggtgctgagcaggaaaaatacgcacatgagcaatattatcatgtataatctgaacttatgttttgttactcacatttttt 1632825  T
Q  283 gctgtaatgttcggccttgtttgagtttttgcattctgttccaattccataacatcaataaacggtggctggggtattactgcagtctttacatcatgac 382  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1632824 gctgtaatgttcggccttgtttgagtttgtgcattccgttccaattccataacatcaataaacggtggctggggtattactgcagtctttacatcatgac 1632725  T
Q  383 tatcctcctgagtttcagtgatttcctccaggacatggactgatgtactaggtaaccgctccttgtgaaattcatattcaacattctgtacctcagaagt 482  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1632724 tatcctcctgagattcagtgatttcccctaggacatggactgatgtactaggtaaccgctccttgtgaaattcatattcaacattctgtacctcagaagt 1632625  T
Q  483 tacagccaagggctctttgtctgtctgcgggaccttgtgctct 525  Q
    |||||||||||||||||||||||||||| ||||| ||||||||    
T  1632624 tacagccaagggctctttgtctgtctgctggaccgtgtgctct 1632582  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 507 - 620
Target Start/End: Complemental strand, 1632565 - 1632452
Alignment:
Q  507 ctgcgggaccttgtgctcttccacttgaaaatccggagtggacacatcaattggccgttcctcctcctgtccggttgtggcaccagattgtgatagtaat 606  Q
    |||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  1632565 ctgcaggaccgtgtgctcttccatttgaaactccggagtggacacatcaattggccgttcctcctcctatccggttggggcaccagattgtgatagtaat 1632466  T
Q  607 tgaatagcatcagg 620  Q
    |||||| |||||||    
T  1632465 tgaataacatcagg 1632452  T

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Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 26657278 - 26657132
Alignment:
Q  88 tgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttg 187  Q
    ||||| |||||||| ||||| || || |||||||||||| ||||||| ||||||||||||||||| ||| |||||||||| ||  |||||||||| || |    
T  26657278 tgctttttggataaaacttgtgtgaagccttcatccgccatccgttgatcatattcacgaatacgtgcctataaatccaaatcattctggacattcttcg 26657179  T
Q  188 aaacctgaacatcttggtgctgagcaggaaaaacacgcacaggagca 234  Q
    ||||  |||  |||||||||||| |||||  ||||| ||||||||||    
T  26657178 aaactggaatctcttggtgctgaacaggagcaacacacacaggagca 26657132  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 10996920 - 10996778
Alignment:
Q  91 ttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttgaaa 190  Q
    ||||||||||  |||||||||||| |||| |||||| ||| ||| |||||||||||||| ||  ||||| |||||||||| || |||| |||||| ||||    
T  10996920 ttcttggatagaacttgcgtaaaatcttcgtccgccatccattgatcatattcacgaattcggacccat-aatccaagtccctttggaaatttttcgaaa 10996822  T
Q  191 cctgaacatcttggtgctgagcaggaaaaacacgcacaggagca 234  Q
    ||||||  || || || |||| |||||| | |||||||||||||    
T  10996821 cctgaatttcctgatggtgagtaggaaacatacgcacaggagca 10996778  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 43999896 - 43999955
Alignment:
Q  17 atgaaacatacgcgcgttttagcaaaagagtatatactagacaaaacatcacaagacaaa 76  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  43999896 atgaaacatacgtgcgttttaacaaaagagtatgtactagacaaaacatcacaagacaaa 43999955  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 1051916 - 1052010
Alignment:
Q  88 tgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacatt 182  Q
    ||||| ||||||| ||||||||| |||||||| |||||| || |||  ||||| |||||||| || ||||||| ||||||||| |||||||||||    
T  1051916 tgctttttggatagtacttgcgtgaaaccttcctccgccatctgtttttcatactcacgaattcgtgcccatatatccaagtcactctggacatt 1052010  T

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Target: scaffold0291 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 15934 - 16046
Alignment:
Q  85 tgttgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacatttt 184  Q
    |||||||| ||||| |  ||||| || || ||||| ||||| ||||||| ||||||||||||||| | ||||||||||||||||||  |||||||||||     
T  15934 tgttgcttattggaaagaacttgagtgaatccttcctccgcggtccgtttgtcatattcacgaattctagcccataaatccaagtcattctggacatttc 16033  T
Q  185 ttgaaacctgaac 197  Q
    | |||| ||||||    
T  16034 tagaaatctgaac 16046  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 43022107 - 43022158
Alignment:
Q  83 gctgttgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttg 134  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  43022107 gctgttgcttcttggacaatacttgcgtaaaaccttcatccgctgtccgttg 43022158  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 12630382 - 12630447
Alignment:
Q  85 tgttgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaata 150  Q
    |||||||||||||||||||||||||| |  ||||| |||||| |||||| ||||||||| ||||||    
T  12630382 tgttgcttcttggataatacttgcgtgagtccttcctccgccatccgtttgtcatattctcgaata 12630447  T

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Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 99316 - 99218
Alignment:
Q  85 tgttgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattt 183  Q
    |||||||| ||||| |  ||||| || || ||||| ||||| ||||||| ||||||||||||||| | ||||||||||||||||||  |||||||||||    
T  99316 tgttgctttttggaaagaacttgagtgaatccttcctccgcggtccgtttgtcatattcacgaattctagcccataaatccaagtcattctggacattt 99218  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 30492033 - 30491953
Alignment:
Q  87 ttgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaa 167  Q
    ||||||||||  ||||||||||||||| || || || || |||||||||||||| |||||||| | |||||||||||||||    
T  30492033 ttgcttcttgcttaatacttgcgtaaatccctcctcggcagtccgttggtcatactcacgaattctagcccataaatccaa 30491953  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 31634720 - 31634819
Alignment:
Q  88 tgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttg 187  Q
    ||||| ||||||||||||||||| || ||||| |||||| |||||| |||||||||  ||||||| ||||| |  ||||||||  ||| |||||| ||||    
T  31634720 tgctttttggataatacttgcgtgaatccttcctccgccatccgtttgtcatattcttgaatacgtgcccaaaggtccaagtcattctagacattctttg 31634819  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 13565509 - 13565415
Alignment:
Q  88 tgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacatt 182  Q
    ||||| ||||||| ||||||||| || ||||| |||||| | ||||  ||||||||||||||| | ||||| |  |||||||| |||| ||||||    
T  13565509 tgctttttggatagtacttgcgtgaatccttcctccgccattcgtttatcatattcacgaatatgtgcccaaaggtccaagtcgctctagacatt 13565415  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 14640752 - 14640691
Alignment:
Q  97 gataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagccca 158  Q
    ||||||||||| || || ||||| |||||| ||||||| |||||||| |||||||| |||||    
T  14640752 gataatacttgagtgaatccttcctccgccatccgttgatcatattcgcgaatacgtgccca 14640691  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 51914 - 51815
Alignment:
Q  88 tgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttg 187  Q
    ||||| ||||||||||||||| | || ||||| |||||| |||||| ||||||||| |||||||| ||||| |  ||||||||  |||||||||| ||||    
T  51914 tgctttttggataatacttgcatgaatccttcctccgccatccgtttgtcatattctcgaatacgtgcccaaaggtccaagtcattctggacattctttg 51815  T

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Target: scaffold0911 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 2837 - 2936
Alignment:
Q  88 tgcttcttggataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagcccataaatccaagtctctctggacattttttg 187  Q
    |||||||||||||| |||||||| || |||||    ||| ||||||| ||||| || ||||| ||||||||||||||||||||  | || ||||||||||    
T  2837 tgcttcttggataacacttgcgtgaagccttctgttgccatccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttttg 2936  T

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Target: scaffold0437 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 7428 - 7367
Alignment:
Q  97 gataatacttgcgtaaaaccttcatccgccgtccgttggtcatattcacgaatacgagccca 158  Q
    ||||||||||| || || ||||| |||||| ||||||| |||||||| |||||||| |||||    
T  7428 gataatacttgagtgaacccttcctccgccatccgttgatcatattcgcgaatacgtgccca 7367  T

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