View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1307_low_7 (Length: 575)
Name: NF1307_low_7
Description: NF1307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1307_low_7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 35040722 - 35040149
Alignment:
| Q |
1 |
cgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaa |
100 |
Q |
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| T |
35040722 |
cgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaacccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaa |
35040623 |
T |
|
| Q |
101 |
tgagattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35040622 |
tgagattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtaaggaatctctct |
35040523 |
T |
|
| Q |
201 |
ggtcgaaactccaacggatccgaatataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaa |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35040522 |
ggtcgaaactcatgcggatccgaatataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaa |
35040423 |
T |
|
| Q |
301 |
cgatacaatcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgc |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35040422 |
cggtacaatcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgc |
35040323 |
T |
|
| Q |
401 |
aaaatctgattctattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaaca |
500 |
Q |
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| T |
35040322 |
aaaatctgattctattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaaca |
35040223 |
T |
|
| Q |
501 |
gaccaggtcaatgtcgctgcggtagtgtctagtacctgctagaattagtgcctgcaaaatattacaataattatt |
575 |
Q |
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| T |
35040222 |
gaccaggtcaatgtcgctgcggtagtgtct-gtacctgctagaattagtgcctgcaaaatattacaataattatt |
35040149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 561
Target Start/End: Complemental strand, 35032700 - 35032146
Alignment:
| Q |
6 |
tgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgaga |
105 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||| |||| ||| |||||||| || | ||||||||| |||||||||| ||||||||||||||||| |
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| T |
35032700 |
tgttcaaccatattaactggtcctccatcttgagtcactatgttaaacccatgcaacaatgcagcaagtgtgatttgcatcaactgaagactaaatgaga |
35032601 |
T |
|
| Q |
106 |
ttccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcg |
205 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| | |||||||||||| | |
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| T |
35032600 |
ttccaggacatattcttctacccacgccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctggttg |
35032501 |
T |
|
| Q |
206 |
aaactccaacggatccgaatataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacgata |
305 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||| ||||| ||| || |||||||||||||||||||||| | || |
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| T |
35032500 |
aaactccaacggatctgaatataatattggatctcgttgaagttttgaaaggttggttaggagacacgtgccagctggcacgtggtatccaccaatggta |
35032401 |
T |
|
| Q |
306 |
caatcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgcaaaat |
405 |
Q |
| |
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||||| ||||| ||||||||||||| || ||||||| | | |||||||| |||||||||||||||||||||||||| |||||| || |||||||| |||| |
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| T |
35032400 |
caatcctcaatagactcatgaggcaaattgagtggtccaggtgggtacaaacgcaatgtttccttgataatggcttggagatactccaactttgccaaat |
35032301 |
T |
|
| Q |
406 |
ctgattctattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacagacca |
505 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |
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| T |
35032300 |
ctgattttattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttagaacttcaggattgttaagaagtaaagatagtgacca |
35032201 |
T |
|
| Q |
506 |
ggtcaatgtcgctgcggtagtgtctagtacctgctagaattagtgcctgcaaaata |
561 |
Q |
| |
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|||||||| |||||||||| ||| ||| | |||||||||| ||||||||||||| |
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| T |
35032200 |
tgtcaatgttcctgcggtagtatct-gtagccgctagaattaatgcctgcaaaata |
35032146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 562
Target Start/End: Complemental strand, 35026752 - 35026199
Alignment:
| Q |
8 |
ttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgagatt |
107 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||||||| |||||||| || |||||||||||||||||||| || ||||||| |||||||||| |
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| T |
35026752 |
ttcaaccatatcaaccggtcctccatctgaagtcactatgtcaaacccatgcaacaatgtagcaagtgttatttgcataagttgaagaccaaatgagatt |
35026653 |
T |
|
| Q |
108 |
ccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctggtcgaa |
207 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| |||| |||||||||||||| |||||||||| |
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| T |
35026652 |
ccaggacacattcttctacctgcaccaaatggaatcaactcgaaatgttggcctttgacatcaacatccttgtgtgttgtgaggaatctttctggtcgaa |
35026553 |
T |
|
| Q |
208 |
actccaacggatccgaatataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacgataca |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||| | |||| |
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| T |
35026552 |
actccaacggatccgaatataacattggatctcgttgaagcttcgaaaggttggttaggagacgcgtaccagctggcacgtggtatccaccaatggtaca |
35026453 |
T |
|
| Q |
308 |
atcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactttgcaaaatct |
407 |
Q |
| |
|
|| ||||| ||||| ||||||| || |||||||| | |||||| |||||||||||||| ||||||||||||| ||||| || ||||| | |||||| |
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| T |
35026452 |
attctcaatagactcgtgaggcaaattcagtggtgctggtgggtatagacgcaatgtttctttgataatggcttgaagatactccaacttcgtcaaatct |
35026353 |
T |
|
| Q |
408 |
gattctattgccatattttccataccaatttgtgtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacagaccagg |
507 |
Q |
| |
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| || ||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||| || ||| ||||||||||||||||||| | || ||| | |
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| T |
35026352 |
gtttgtattgccatcttttccttaccaatttgtgtatctaattcatgaatgactttgtttaggacctcacgattgttaagaagtaaagatagagtccaag |
35026253 |
T |
|
| Q |
508 |
tcaatgtcgctgcggtagtgtctagtacctgctagaattagtgcctgcaaaatat |
562 |
Q |
| |
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||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
35026252 |
tcaatgttcctgctgtagtgtct-gtagctgctagaattagtgcctgcaaaatat |
35026199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 3 - 454
Target Start/End: Complemental strand, 35048342 - 35047891
Alignment:
| Q |
3 |
ctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaatccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatg |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||| || |||||||||||||| ||||| |||||||||||||| || |||| ||||| ||||| |
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|
| T |
35048342 |
ctttgttcaaccataccaactggtcctccatcttgagtcactatatcaaatccatgcaacaaagttgcaagtgttatttgaattagcttaagaccaaatg |
35048243 |
T |
|
| Q |
103 |
agattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtgaggaatctctctgg |
202 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||| |||| |||||||||||||||||||| |
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|
| T |
35048242 |
atattccgggacacattcttctacccgcaccaaatggaatcaactcaaaatgttggcctttgagatcaatatccttgtgtgttgtgaggaatctctctgg |
35048143 |
T |
|
| Q |
203 |
tcgaaactccaacggatccgaatataacattggatctcgttgaagtttcgaaaggttagttatgagacgcgtaccggctggcacgtggtatccaccaacg |
302 |
Q |
| |
|
||||||||| | |||| ||||||| | |||||| | |||||||| |||| ||| || | |||||| ||||| || ||||| || |||||||||| | |
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| T |
35048142 |
tcgaaactctagtggattagaatatataaacggatcttgctgaagttttgaaatgtttgtaaggagacgagtaccagcgggcacatgatatccaccaatg |
35048043 |
T |
|
| Q |
303 |
atacaatcttcaatggactcatgaggcacatcgagtggtgcggctgggtacagacgcaatgtttccttgataatggctttgagatattcaaactt-tgca |
401 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| ||| ||| ||| |||| ||||||||||||||| |||| ||||| || ||||| ||| |
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|
| T |
35048042 |
gtacaatcttcagtggactcatgaggcacatttagtggcacggttggacacaagcgcattgtttccttgataatagcttgaagatactctaacttgtgc- |
35047944 |
T |
|
| Q |
402 |
aaatctgattctattgccatattttccataccaatttgtgtatctaattcttg |
454 |
Q |
| |
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||||||||||| ||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
35047943 |
aaatctgattccattaccatcttttctctaccaatttgtgtatctaattcttg |
35047891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 2261243 - 2261333
Alignment:
| Q |
90 |
tgaagactaaatgagattccaggacatattcttctacccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgt |
180 |
Q |
| |
|
||||||| ||| || ||||| |||||||| |||||||| |||||||| | ||||||||||||||| |||||| |||| |||| ||||| |
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|
| T |
2261243 |
tgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaacaactcaaaatgttgacccttggcatcaacatttttgt |
2261333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 22906280 - 22906328
Alignment:
| Q |
105 |
attccaggacatattcttctacccgcaccaaatggaatcaactcaaaat |
153 |
Q |
| |
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|||||||||||||| ||||| || ||||||||||| || |||||||||| |
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| T |
22906280 |
attccaggacatatccttctcccagcaccaaatggtataaactcaaaat |
22906328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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