View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308-Insertion-1 (Length: 554)
Name: NF1308-Insertion-1
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308-Insertion-1 |
 | |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
| | |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 90 - 554
Target Start/End: Original strand, 7759509 - 7759977
Alignment:
| Q |
90 |
aattaggttcaaaacattcgatcacttaacacaaagtaattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagagaaagga |
189 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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|
| T |
7759509 |
aattaggttcaaaacattcattcacttaacacgaagtaattaaccttatcactaattatcatatatcaaattgtaaattgcggaaattaaagagaaatga |
7759608 |
T |
|
| Q |
190 |
agagaaaacaccagggtttatagtgaccccccaattgtccttgctatggggtacatcacttttcgtataagaaattataaggtcttctactattatgttg |
289 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7759609 |
agagaaaacaacagggtttatagtgaccccccaattgtcctcgctatggggtacatcactttttgtataagaaattataaggtcttctactattatgttg |
7759708 |
T |
|
| Q |
290 |
ttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaagcctccaa---ct |
386 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
7759709 |
ttggaattatagaatcaagcacaaagattcttttaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaatcctccaaggtct |
7759808 |
T |
|
| Q |
387 |
ttgaacctcaaacttccatgcactccttc-atcttcttgtccaatttacgacacattaccaatgagtcatacccagcaaatacaaatggttattttgcaa |
485 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
7759809 |
ttgaacctcaaacttccatgcactccttcaatcttcttgcccaatttacgacacattaccaatgagtcatacccagcaaatacaaatggttattttgaga |
7759908 |
T |
|
| Q |
486 |
ccgaaaattggtatgaaggtgtagtactaagctctgcatcgatctatcatatctcattttaaaaatcga |
554 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7759909 |
ccggaaattggtatgaaggtgtagtactaagctctgcatcgatctatcatttctcattttaaaaatcga |
7759977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 376
Target Start/End: Complemental strand, 29928079 - 29927826
Alignment:
| Q |
126 |
taattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagagaaaggaaga-gaaaacaccagggtttatagtgacc-ccccaa |
223 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||| |||||||| |||||||||||||| | ||| | |||||| | |||||||||| |||||| |
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|
| T |
29928079 |
taattaacctaatcaataaatatcatatatcaaacggtaaattgcaaaaattaaagagaaaaggagaaggaaacacttgtgtttatagtggtttccccaa |
29927980 |
T |
|
| Q |
224 |
ttgtccttgctatggggtacat-cacttttcgtataagaaattataaggtcttctactattatgttgttgaaattatagaatcaagcacaaagattcttt |
322 |
Q |
| |
|
| ||||| |||||||||||| | |||| |||||| || || || | ||||||| ||| |||||| ||||||| | |||| |||||||||| || |
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|
| T |
29927979 |
tcgtcctcgctatggggtaccttcactcttcgtaaaaaaagttgaatggtcttccactgttatgtcaatgaaatttcgtagtcaattacaaagattcctt |
29927880 |
T |
|
| Q |
323 |
caatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaa |
376 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||| | ||| ||||||||| |
|
|
| T |
29927879 |
caatttacgaatccaaccaatcctaaatcttatatgctcaataatcactccaaa |
29927826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 144 - 375
Target Start/End: Complemental strand, 31639206 - 31638972
Alignment:
| Q |
144 |
attatcatatatcaaattataaattgcggaaattaaagagaaaggaagagaaaacaccagggtttatagtga-ccccccaattgtccttgctat-ggggt |
241 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||| ||| ||||| |
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|
| T |
31639206 |
attatcatatatcaaattgtaaattgcagaaattaaagagaaaggaagagaaaatactagtgtttatagtgattcccccaatcacccttgttatgggggt |
31639107 |
T |
|
| Q |
242 |
aca-tcacttttcgtataagaaattataaggtcttctactattatgttgttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaatt |
340 |
Q |
| |
|
||| |||| |||||| |||||||| || || ||| ||||||||||||||||||||| | || ||| |||||| ||| |||||| ||||||| | |
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|
| T |
31639106 |
acacccactcttcgtagaagaaattctacagtattccactattatgttgttgaaattacgatgttaataacagagattccttcgatttacaaatccaagt |
31639007 |
T |
|
| Q |
341 |
gattctaaatcttctatgctaagtaaccactccaa |
375 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||| |
|
|
| T |
31639006 |
gatcttaaaccttctatggtaagtaaccactccaa |
31638972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 32696964 - 32696899
Alignment:
| Q |
310 |
acaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaa |
376 |
Q |
| |
|
|||||||||| |||||||||||||||||| || |||||||| |||||||| ||||||||||||| |
|
|
| T |
32696964 |
acaaagattccttcaatttacgaatccaaccaatcctaaatctcatatgctaa-taaccactccaaa |
32696899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 372
Target Start/End: Complemental strand, 18311226 - 18311143
Alignment:
| Q |
288 |
tgttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactc |
372 |
Q |
| |
|
||||||||||| | | |||| |||||||||| ||| |||||||||| ||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
18311226 |
tgttgaaattacatagtcaactacaaagattcattcgatttacgaattcaaccgatcgtaaatcttcta-gctaagtaaccactc |
18311143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 24803572 - 24803536
Alignment:
| Q |
345 |
ctaaatcttctatgctaagtaaccactccaaagcctc |
381 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
24803572 |
ctaaatcttctacgctaagtaatcactccaaagcctc |
24803536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 26242343 - 26242247
Alignment:
| Q |
280 |
tattatgttgttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaa |
376 |
Q |
| |
|
|||||||||| ||||||| || | |||| |||||| ||| ||| | |||||||| ||| ||| |||||| |||| || ||||||||||||||||| |
|
|
| T |
26242343 |
tattatgttgctgaaattgtatagtcaactacaaaggttccttcgacttacgaattcaaccgatcctaaatattctttgttaagtaaccactccaaa |
26242247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 127 - 367
Target Start/End: Original strand, 27595437 - 27595678
Alignment:
| Q |
127 |
aattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagagaaaggaagagaaa-acaccagggtttatagt-gaccccccaat |
224 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||| | ||||||| |
|
|
| T |
27595437 |
aattaacctaatcaacaattatcatatatcaaattataaattgtagaaattaaagaaaaaggaagagaaacacacccacatttatagtggttcccccaac |
27595536 |
T |
|
| Q |
225 |
tgtccttgctatggggtaca-tcacttttcgtataagaaattataaggtcttctactattatgttgttgaaattatagaatcaagcacaaagattctttc |
323 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||| || ||| |||| |||||| |||||||| ||| |||||| |||| | ||| | || ||||| || |
|
|
| T |
27595537 |
cgtccttggtatggggtacattcactcttcgtagaaaaaactatacggtctttaactattatattgctgaaat--tagagtgaagtaaaatgattccttt |
27595634 |
T |
|
| Q |
324 |
aatttacgaatccaattgattctaaatcttctatgctaagtaac |
367 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
27595635 |
aatttgtgaatccaactgatcctaaatcttctatgctaagtaac |
27595678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 384
Target Start/End: Complemental strand, 13079071 - 13078967
Alignment:
| Q |
280 |
tattatgttgttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaagcc |
379 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||| |||||||||||||||||| || ||||||||||||| ||||||| ||||||||| || |
|
|
| T |
13079071 |
tattatgttcttgaaattacactgtcaactacaaagattccttcaatttacgaatccaaccaatcataaatcttctatgataagtaatcactccaaaacc |
13078972 |
T |
|
| Q |
380 |
tccaa |
384 |
Q |
| |
|
||||| |
|
|
| T |
13078971 |
tccaa |
13078967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 381
Target Start/End: Complemental strand, 9654 - 9544
Alignment:
| Q |
271 |
gtcttctactattatgttgttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccac |
370 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| |||||||||| || |||||| |||||||| ||| ||||||||| ||||||||| || ||| |
|
|
| T |
9654 |
gtcttccactattatgttgttgaaattatagagtcaattacaaagattcctttaatttatgaatccaaccgatcctaaatcttatatgctaaggaatcac |
9555 |
T |
|
| Q |
371 |
tccaaagcctc |
381 |
Q |
| |
|
|||||| |||| |
|
|
| T |
9554 |
tccaaaacctc |
9544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 9777 - 9706
Alignment:
| Q |
126 |
taattaaccttatcactaattatcatatatcaaattataaattgcggaaattaaagagaaaggaagagaaaa |
197 |
Q |
| |
|
||||||| || |||| ||| ||||||||||||||| |||||| | ||||||||||||||| |||||||||| |
|
|
| T |
9777 |
taattaatctaatcaacaatcatcatatatcaaattgtaaatttcagaaattaaagagaaatgaagagaaaa |
9706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 83222 - 83148
Alignment:
| Q |
310 |
acaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaagcctccaa |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| | |||||||||||||| |||| |||| ||| ||||||| |
|
|
| T |
83222 |
acaaagattccttcaatttacgaatccaactgatcattaatcttctatgctatgtaatcactgtaaaacctccaa |
83148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 8142245 - 8142314
Alignment:
| Q |
146 |
tatcatatatcaaattataaattgcggaaattaaa-gagaaaggaagagaaaacaccagggtttatagtg |
214 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
8142245 |
tatcatatatcaaattataaaatgttgaatttaaaagagaaaggaagagaaaacactggcgtttatagtg |
8142314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 23342087 - 23342188
Alignment:
| Q |
271 |
gtcttctactattatgttgttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccac |
370 |
Q |
| |
|
|||||| |||||||||||||||| |||| ||| |||| ||||||||| | |||||| | ||||| |||| |||||| |||| ||||||||||||| |
|
|
| T |
23342087 |
gtcttccactattatgttgttgagattacagagtcaattacaaagatttagttgatttacaattccaactgatcctaaatgttctgagctaagtaaccac |
23342186 |
T |
|
| Q |
371 |
tc |
372 |
Q |
| |
|
|| |
|
|
| T |
23342187 |
tc |
23342188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 13399199 - 13399134
Alignment:
| Q |
310 |
acaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaa |
375 |
Q |
| |
|
||||||||||||| ||| ||| ||||||| ||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
13399199 |
acaaagattctttgaatctacaaatccaaccgatcctaaaccttctatgctaagtaatcactccaa |
13399134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 21583340 - 21583287
Alignment:
| Q |
310 |
acaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaag |
363 |
Q |
| |
|
|||||||||| ||||||||| |||||||| | | ||||||||||||||||||| |
|
|
| T |
21583340 |
acaaagattccttcaatttaagaatccaaccgttcctaaatcttctatgctaag |
21583287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 10590268 - 10590357
Alignment:
| Q |
287 |
ttgttgaaattatagaatcaagcacaaagattctttcaatttacgaatccaattgattctaaatcttctatgctaagtaaccactccaaa |
376 |
Q |
| |
|
||||| |||||| ||| |||| ||||| |||||||| |||||||||||||| ||| ||||||||| ||| |||| ||||||||||| |
|
|
| T |
10590268 |
ttgttaaaattacagagtcaattacaaatattctttcgatttacgaatccaaccgatcctaaatcttatattacaagttaccactccaaa |
10590357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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