View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308-Insertion-3 (Length: 233)
Name: NF1308-Insertion-3
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 33355590 - 33355365
Alignment:
| Q |
7 |
acaacacacgcatgcacgcacttgcgcgcacgcacgcacatatcatgtgtggtaaaaatcattttagtaagcactttatgaacaccacctactatttctg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
33355590 |
acaacacacgcatgcacgcacttgcgcgcacgcacgcacatatcatgtgtggtaaaaatcattttagtaagctctttatgaacaccacctattgtttctg |
33355491 |
T |
|
| Q |
107 |
gtttgagggattccaactcgatggaagagagttgaagatcttggcagagattgaaattgattcttaaagaaacgcaattgctcctcacgactactaccac |
206 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33355490 |
gtttgagggattccaactcgatagaagagagttgaagatcttggcagagattgaaattgattcttaaagaaacgcaattgctcctcacgactaccaccac |
33355391 |
T |
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| Q |
207 |
cacctgttgttttcgtcgtcttctta |
232 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33355390 |
cacctgttgttttcgtcgtcttctta |
33355365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 33543997 - 33544183
Alignment:
| Q |
7 |
acaacacacgcatgcacgcacttgcgcgcacgcacgcacatatcatgtgtggtaaaaatcattttagtaagcactttatgaacaccacctactatttctg |
106 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |||||| |
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| T |
33543997 |
acaaaacacgcatgcacgcacttgcgcgcacgcacacacatatcatgtgtggtaaaaatcattttagtaagctctttatgaacaccacgtattgtttctg |
33544096 |
T |
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| Q |
107 |
gtttgagggattccaactcgatggaagagagttgaagatcttggcagagattgaaattgattcttaaagaaacgcaattgctcctca |
193 |
Q |
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| T |
33544097 |
gtttgagggattccaactcgatagaagagagttgaagatcttggcagagattgaaattgattcttaaagaaacgcaattgctcctca |
33544183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 33547810 - 33548019
Alignment:
| Q |
7 |
acaacacacgcatgcacgcacttgcgcgcacgcacgcacatatcatgtgtggtaaaaatcattttagtaagcactttatgaacaccacctactatttctg |
106 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| |||||||||| || | |||||| |
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| T |
33547810 |
acaacacacgcatgcacgcacttgcacgaacgcacacacatatcatgtgtggtaaaaatcattttagtaagctctttatgaac------tattgtttctg |
33547903 |
T |
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| Q |
107 |
gtttgagggattccaactcgatggaagagagttgaagatcttggcagagattgaaattgattcttaaagaaacgcaattgctcctcacgactactaccac |
206 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33547904 |
gtttgagggattccaactcgatagaagatagttgaagatcttggcagagattgaaactgattcttaaagaaacgcaattgctcctcacgactactaccac |
33548003 |
T |
|
| Q |
207 |
cacctgttgttttcgt |
222 |
Q |
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| T |
33548004 |
cacctgttgttttcgt |
33548019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 33546849 - 33547048
Alignment:
| Q |
8 |
caacacacgcatgcacgcacttgcgcgcacgcacgcacatatcatgtgtggtaaaaatcattttagtaagcactttatgaacaccacctactatttctgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| || | ||||| | |
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| T |
33546849 |
caacacacgcatgcacgcacttgcgcgcacgcacacacatatcatgtgtggtaaaaattattttagtaagctctttatgaac------tattgtttctag |
33546942 |
T |
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| Q |
108 |
tttgagggattccaactcgatggaagagagttgaagatcttggcagagattgaaattgattcttaaagaaacgcaattgctcctcacgactactaccacc |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33546943 |
tttgagggattccaactcgatagaagagagttgaagatcttggcagagattgaaattggttcttaaagaaacgcaattgctcctcacgactactaccacc |
33547042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 52862545 - 52862460
Alignment:
| Q |
103 |
tctggtttgagggattccaactcgatggaagagagttgaagatc-ttggcagagattgaaattgattcttaaagaaacgcaattgctc |
189 |
Q |
| |
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|||| ||| |||||||||||||| || ||||||||||||| ||| ||||| ||||||||||| |||| ||||||||||| |||||| |
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| T |
52862545 |
tctgctttcagggattccaactctatagaagagagttgaacatcattggc--agattgaaattcattcacaaagaaacgcagttgctc |
52862460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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