View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308-Insertion-5 (Length: 517)
Name: NF1308-Insertion-5
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308-Insertion-5 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 653606 - 653096
Alignment:
| Q |
8 |
cctaatgcaaagggtgggattgataaccctatggttaatccttgtgctattggtgcacctagtttggctacacttggatgttctaaaatactactaacta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
653606 |
cctaatgcaaagggtgggattgataaccctatggttaatccttgtgctattggtgcacctagtttggctacacttggatgttctaaaatactactaacta |
653507 |
T |
|
| Q |
108 |
ttactgacaaggatgagtttagagacagagatgttttgtactatgagtctgttagagaaagtgggtggcaaggtcaacttgaactgtttgaagctggaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
653506 |
ttactgacaaggatgagtttagagacagagatgttttgtactatgagtctgttaaagaaagtgggtggcaaggtcaacttgaactgtttgaagctggaga |
653407 |
T |
|
| Q |
208 |
tgaggaacatggttttcagatcttcaaacctgaaactgatggggctaaacaatttatcaaacgcttagcttcttttcttgtttgattaaccc-tttcaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
653406 |
tgaggaacatggttttcagatcttcaaacctgaaactgatggggctaaacaatttatcaaacgcttagcttcttttcttgtttgattaacccttttcaat |
653307 |
T |
|
| Q |
307 |
aaatgtaagagaaaaatgtattggtccgtaagtgagggnnnnnnngtccatagttgtttgtgaaatattgttgagcttattaaatgattgatcaaactca |
406 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
653306 |
aaatgttaaagaaaaatgtattggtccgtaagtgagggaaaaaaaatccatagttgtttatgaaatattgttgagcttattaaatgattgatcaaactca |
653207 |
T |
|
| Q |
407 |
tttctttagttgccaaacaagttcaacacgaggtcgggaaataaacaatttcttttgtaatcttggctccatttatcaaattgagtttactttgattcgt |
506 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
653206 |
tttctttagttgacaaacaagttcaacacgaggtcgggaaataaacaatttcttttgtaatcttggccccatttatcaaattgagtttactttgaatcgt |
653107 |
T |
|
| Q |
507 |
tttggtgttta |
517 |
Q |
| |
|
||||||||||| |
|
|
| T |
653106 |
tttggtgttta |
653096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University