View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308-Insertion-6 (Length: 565)

Name: NF1308-Insertion-6
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308-Insertion-6
NF1308-Insertion-6
[»] chr3 (21 HSPs)
chr3 (8-477)||(26403207-26403679)
chr3 (476-565)||(43207452-43207542)
chr3 (478-565)||(53507096-53507183)
chr3 (477-565)||(44708281-44708370)
chr3 (478-562)||(50939450-50939534)
chr3 (478-565)||(34290851-34290940)
chr3 (478-565)||(48156942-48157031)
chr3 (477-565)||(9878899-9878986)
chr3 (495-565)||(54407370-54407439)
chr3 (477-543)||(48720530-48720596)
chr3 (144-249)||(26395415-26395520)
chr3 (83-167)||(26402493-26402577)
chr3 (487-544)||(47467591-47467648)
chr3 (493-544)||(50258733-50258784)
chr3 (492-542)||(36605861-36605911)
chr3 (493-542)||(27078819-27078868)
chr3 (493-542)||(27084616-27084665)
chr3 (493-542)||(36716276-36716325)
chr3 (493-542)||(38681348-38681397)
chr3 (493-542)||(54619454-54619503)
chr3 (493-529)||(3954866-3954902)
[»] chr8 (10 HSPs)
chr8 (476-565)||(42600582-42600672)
chr8 (493-565)||(23606833-23606905)
chr8 (493-565)||(23798473-23798545)
chr8 (493-565)||(10917210-10917281)
chr8 (493-544)||(20003875-20003926)
chr8 (493-542)||(2952473-2952522)
chr8 (493-542)||(3048774-3048823)
chr8 (493-542)||(5860996-5861045)
chr8 (493-554)||(45472207-45472268)
chr8 (494-542)||(30883127-30883175)
[»] chr6 (13 HSPs)
chr6 (476-565)||(20711930-20712020)
chr6 (476-565)||(17353757-17353846)
chr6 (493-565)||(27788900-27788972)
chr6 (476-565)||(235437-235527)
chr6 (493-565)||(19986982-19987054)
chr6 (477-565)||(28075587-28075676)
chr6 (490-544)||(30832666-30832720)
chr6 (493-543)||(23070889-23070939)
chr6 (493-542)||(11081684-11081733)
chr6 (493-542)||(13727650-13727699)
chr6 (493-554)||(19741212-19741273)
chr6 (493-529)||(21280349-21280385)
chr6 (493-529)||(27314778-27314814)
[»] chr1 (15 HSPs)
chr1 (478-565)||(40502002-40502090)
chr1 (478-565)||(13913695-13913782)
chr1 (477-565)||(9173234-9173322)
chr1 (490-565)||(19955544-19955618)
chr1 (478-565)||(17168769-17168855)
chr1 (493-565)||(27559463-27559536)
chr1 (477-565)||(44895466-44895555)
chr1 (493-543)||(1367111-1367161)
chr1 (475-542)||(51607674-51607742)
chr1 (493-554)||(23181727-23181788)
chr1 (493-544)||(14146221-14146272)
chr1 (493-526)||(5027991-5028024)
chr1 (493-542)||(27906949-27906998)
chr1 (493-542)||(44655555-44655604)
chr1 (493-529)||(41697293-41697329)
[»] chr7 (13 HSPs)
chr7 (478-565)||(47985181-47985268)
chr7 (478-562)||(20091496-20091579)
chr7 (493-565)||(24525896-24525968)
chr7 (493-565)||(48984056-48984127)
chr7 (477-565)||(19691896-19691985)
chr7 (477-565)||(38415087-38415175)
chr7 (479-565)||(25010254-25010340)
chr7 (477-565)||(10329621-10329710)
chr7 (493-565)||(23551283-23551355)
chr7 (493-543)||(28749597-28749647)
chr7 (475-526)||(10027615-10027667)
chr7 (493-529)||(12596443-12596479)
chr7 (487-542)||(18777019-18777075)
[»] chr4 (24 HSPs)
chr4 (493-565)||(24969258-24969330)
chr4 (481-565)||(40089328-40089411)
chr4 (493-565)||(16844843-16844916)
chr4 (478-543)||(38352489-38352554)
chr4 (481-565)||(54083456-54083541)
chr4 (493-565)||(32128408-32128480)
chr4 (474-565)||(2790952-2791044)
chr4 (493-565)||(37777436-37777509)
chr4 (478-565)||(19498313-19498400)
chr4 (496-560)||(34027407-34027471)
chr4 (495-565)||(16882606-16882675)
chr4 (494-552)||(35463958-35464016)
chr4 (478-526)||(54779441-54779490)
chr4 (490-542)||(38209842-38209894)
chr4 (493-544)||(1105447-1105498)
chr4 (493-564)||(10431421-10431492)
chr4 (487-529)||(9579483-9579525)
chr4 (487-529)||(9585178-9585220)
chr4 (493-543)||(45560704-45560754)
chr4 (493-526)||(35780573-35780606)
chr4 (493-542)||(55255096-55255145)
chr4 (493-529)||(5128997-5129033)
chr4 (493-553)||(17679233-17679293)
chr4 (493-553)||(47127997-47128057)
[»] chr2 (12 HSPs)
chr2 (478-565)||(26715931-26716018)
chr2 (478-561)||(27506957-27507041)
chr2 (476-561)||(24410234-24410319)
chr2 (493-561)||(9045848-9045915)
chr2 (498-565)||(8327488-8327554)
chr2 (478-563)||(10762779-10762865)
chr2 (493-542)||(4505695-4505744)
chr2 (493-544)||(3952915-3952966)
chr2 (493-542)||(3155019-3155068)
chr2 (487-524)||(5952949-5952986)
chr2 (493-542)||(6964808-6964857)
chr2 (474-525)||(52968-53020)
[»] chr5 (14 HSPs)
chr5 (493-564)||(16199005-16199076)
chr5 (478-565)||(27923885-27923972)
chr5 (477-565)||(38869572-38869660)
chr5 (478-565)||(7670728-7670814)
chr5 (496-565)||(9364113-9364181)
chr5 (478-565)||(40389745-40389831)
chr5 (493-561)||(16799539-16799606)
chr5 (493-544)||(15480228-15480279)
chr5 (493-544)||(19523109-19523160)
chr5 (493-542)||(34756615-34756664)
chr5 (493-529)||(22987481-22987517)
chr5 (493-561)||(30853282-30853350)
chr5 (493-529)||(31881604-31881640)
chr5 (478-542)||(34855925-34855989)
[»] scaffold0039 (1 HSPs)
scaffold0039 (478-552)||(106379-106454)
[»] scaffold0027 (1 HSPs)
scaffold0027 (476-565)||(4147-4236)
[»] scaffold0070 (1 HSPs)
scaffold0070 (493-529)||(1027-1063)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 26403207 - 26403679
Alignment:
Q  8 tgctggcctttggtaatcaagaggcatgcatcagtggagtaaaagaattaccacaagacgaggacatcatcaacaacaacaataacatgaatatagagaa 107  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26403207 tgctggcctttgtaaatcaagaggcatgcatcagtggagtaaaagaattaccacaagacaaggacatcatcaacaacaacaataacatgaatatagagaa 26403306  T
Q  108 atcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaaatggatcctaag 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  26403307 atcaaatcttggtcatgttaagaagaacagcatcaatggtggtagtgcaactacaagtgatagtgtt-gtgaccaagcaacacaaaaaatggatcctaag 26403405  T
Q  208 atgctcaaactgtatacttatgttacttatagttgtgagcaatataacagtatgttggcaggtaaaaaagcatagagaatcacaatttttaatccatagg 307  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  26403406 atgctcaaactgtatacttatgttacttatagttgtgagcaacataacagtatgttggcaagttaaaaagcatagagaatcacaatttttaatccatagg 26403505  T
Q  308 gctaagtgtggtggaaataaaatttggnnnnnnnnnnnnnnnnnnnnnnnnnagtaaaacctgaaaaaactagtatcataaatttaataaacttttaatt 407  Q
    |||||||| ||||||||||||||||||                         |||||||||||||||||||||||| |||||||||||||||||||||||    
T  26403506 gctaagtgaggtggaaataaaatttggcttttgttttgattttttttcttttagtaaaacctgaaaaaactagtataataaatttaataaacttttaatt 26403605  T
Q  408 caaagattaaaataaat----ttatctagtcgttcgggtttcaagttattagctttatcaactatgtacctgat 477  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26403606 caaagattaaaataaatttaattatctagtcgttcgggtttcaagttattagctttatcaactatgtacctgat 26403679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 43207542 - 43207452
Alignment:
Q  476 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  43207542 atcaggcccggtcctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactag 43207452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 565
Target Start/End: Complemental strand, 53507183 - 53507096
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  53507183 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 53507096  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 565
Target Start/End: Original strand, 44708281 - 44708370
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  44708281 tcaggcccggctctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatatccactag 44708370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 478 - 562
Target Start/End: Complemental strand, 50939534 - 50939450
Alignment:
Q  478 caggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccac 562  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  50939534 caggcccgtccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccac 50939450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 565
Target Start/End: Complemental strand, 34290940 - 34290851
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactag 565  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||  ||| ||||||||| |||||||    
T  34290940 caggcccgaccctgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaatttttttttttaatatccactag 34290851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 48156942 - 48157031
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagttt-gtttttaatacccactag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||  |||||||||||||||||    
T  48156942 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcctaaattttattttttaatacccactag 48157031  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 9878986 - 9878899
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||  || |||||||||||||||||    
T  9878986 tcaggtccggccctgagggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa--ttttttttaatacccactag 9878899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 54407439 - 54407370
Alignment:
Q  495 ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||    
T  54407439 ggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacctactag 54407370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 477 - 543
Target Start/End: Complemental strand, 48720596 - 48720530
Alignment:
Q  477 tcaggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 543  Q
    |||||| || |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  48720596 tcaggcacggccctgacgggtgcaaacagctcaacagagctgagcttccctcagtcatgggcctcaa 48720530  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 26395415 - 26395520
Alignment:
Q  144 tggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgt 243  Q
    ||||||||||||| || ||| || | |||||||||| ||||||| ||||||  ||||||| |||| |||||||| |||||||| ||| ||||||| ||||    
T  26395415 tggtggtagtgcatctgcaaatgttggtgttggtgatcaagcaacacaaaatttggatccaaagaggctcaaacggtatacttgtgtaacttatatttgt 26395514  T
Q  244 gagcaa 249  Q
    ||||||    
T  26395515 gagcaa 26395520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 26402493 - 26402577
Alignment:
Q  83 acaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtga 167  Q
    ||||||||||| | |||||||| ||||||||||||||| || || ||||||||| ||| ||||||||||| ||||||||| ||||    
T  26402493 acaacaataacttaaatatagaaaaatcaaatcttggttatattgagaagaaccacatgaatggtggtagagcaactacaggtga 26402577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 487 - 544
Target Start/End: Original strand, 47467591 - 47467648
Alignment:
Q  487 ccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||||||||  |||||| ||||||||||   ||||||||||||    
T  47467591 ccctgaggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaag 47467648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Complemental strand, 50258784 - 50258733
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  50258784 ggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaag 50258733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 542
Target Start/End: Original strand, 36605861 - 36605911
Alignment:
Q  492 aggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    |||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  36605861 aggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 27078868 - 27078819
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27078868 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 27084665 - 27084616
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27084665 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 36716325 - 36716276
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  36716325 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36716276  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 38681397 - 38681348
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  38681397 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38681348  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 54619503 - 54619454
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  54619503 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 54619454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 3954902 - 3954866
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  3954902 ggggtgcaaacagctcaaacgagctgggcctccctca 3954866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 42600582 - 42600672
Alignment:
Q  476 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  42600582 atcaggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttatttttaatacccactag 42600672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 23606905 - 23606833
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  23606905 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaaattttcttttaatacccactag 23606833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 23798545 - 23798473
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  23798545 ggggtgcgaacagctcaacaaagctgggcctccctcagtcatgggcctcaaatttttttttaatacccactag 23798473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 10917210 - 10917281
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  10917210 ggggtgcaaacagctcaacagagctgggcctccctcactcatgggccacaa-tttttttttaatacccactag 10917281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Complemental strand, 20003926 - 20003875
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  20003926 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 20003875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 2952522 - 2952473
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  2952522 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 2952473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 3048823 - 3048774
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  3048823 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 5861045 - 5860996
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  5861045 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 5860996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 45472207 - 45472268
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttta 554  Q
    ||||||||||||||||||| |||||||||| ||| ||   ||||||||||| ||| ||||||    
T  45472207 ggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaatttttttttta 45472268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 542
Target Start/End: Original strand, 30883127 - 30883175
Alignment:
Q  494 gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    |||||||||||||||||  |||||||||||||||||   ||||||||||    
T  30883127 gggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 20712020 - 20711930
Alignment:
Q  476 atcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  20712020 atcaggcccggccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactag 20711930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 17353757 - 17353846
Alignment:
Q  476 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  17353757 atcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 17353846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 27788972 - 27788900
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  27788972 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaatttttttttaatacccactag 27788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 235527 - 235437
Alignment:
Q  476 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||    
T  235527 atcaggcccgtccctgagggggtgcaaacagcttaacagagctgggcctccctcagtcatggaccttaattttttttttaatacccactag 235437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 19986982 - 19987054
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||    
T  19986982 ggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaaatttttttttaatacccactag 19987054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 477 - 565
Target Start/End: Original strand, 28075587 - 28075676
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||| | |||||||| ||||||||||||||||||||| ||| ||| |||||||||||| |||| ||| |||||||||||||||||    
T  28075587 tcaggcccggctctgagggggtgcaaacagctcaacagagctaggcttccttcagtcatgggcttcaattttttttttaatacccactag 28075676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 544
Target Start/End: Complemental strand, 30832720 - 30832666
Alignment:
Q  490 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    |||||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  30832720 tgaggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaag 30832666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 23070939 - 23070889
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 543  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  23070939 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 11081733 - 11081684
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  ||||| ||||||||| || |||||||||||    
T  11081733 ggggtgcaaacagctcaatggagctaggcctccctaaggcatgggcctca 11081684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 13727699 - 13727650
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  13727699 ggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctca 13727650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 19741273 - 19741212
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttta 554  Q
    ||||||||||||||||||  |||||||||||||||||   |||| |||||| ||| ||||||    
T  19741273 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaatttttttttta 19741212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 21280349 - 21280385
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  21280349 ggggtgcaaacagctcaaacgagctgggcctccctca 21280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 27314814 - 27314778
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  27314814 ggggtgcaaacagctcaaacgagctgggcctccctca 27314778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 478 - 565
Target Start/End: Complemental strand, 40502090 - 40502002
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  40502090 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactag 40502002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 565
Target Start/End: Complemental strand, 13913782 - 13913695
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  13913782 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 13913695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 9173322 - 9173234
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9173322 tcaggcccggccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 9173234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 490 - 565
Target Start/End: Original strand, 19955544 - 19955618
Alignment:
Q  490 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||    
T  19955544 tgaggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa-tttttttttaatacccactag 19955618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 17168769 - 17168855
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||  || |||||||||||||||||    
T  17168769 caggcccgaccctgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa--ttttttttaatacccactag 17168855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 27559463 - 27559536
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||    
T  27559463 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaatttttttttttaatacccactag 27559536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 477 - 565
Target Start/End: Original strand, 44895466 - 44895555
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| |||||||    
T  44895466 tcaggctcggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggccacatttttttttttaatatccactag 44895555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 1367161 - 1367111
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1367161 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 1367111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 542
Target Start/End: Complemental strand, 51607742 - 51607674
Alignment:
Q  475 gatcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    |||||||||||  | ||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  51607742 gatcaggcccggtcatgaggtggtgcaaacagctcaatagagctgggccttcctcaatcatgggcctca 51607674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 23181727 - 23181788
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttta 554  Q
    ||||||||||||||||||| |||||||||| ||| || | ||||||||||| ||| ||||||    
T  23181727 ggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaaattttttttta 23181788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Original strand, 14146221 - 14146272
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  14146221 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 14146272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 526
Target Start/End: Complemental strand, 5028024 - 5027991
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccc 526  Q
    ||||||||||||||||||| ||||||||||||||    
T  5028024 ggggtgcaaacagctcaaccgagctgggcctccc 5027991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 27906998 - 27906949
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27906998 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27906949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Original strand, 44655555 - 44655604
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  44655555 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 44655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 41697329 - 41697293
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  41697329 ggggtgcaaacagctcaaacgagctgggcctccctca 41697293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 565
Target Start/End: Complemental strand, 47985268 - 47985181
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 47985181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 562
Target Start/End: Complemental strand, 20091579 - 20091496
Alignment:
Q  478 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccac 562  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  20091579 caggcccgtccctggggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccac 20091496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 24525968 - 24525896
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  24525968 ggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaattttttttttaatacccactag 24525896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 48984127 - 48984056
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  48984127 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 48984056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 477 - 565
Target Start/End: Original strand, 19691896 - 19691985
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtc-atgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||    
T  19691896 tcaggcccgaccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcaatgggcctcaa-tttttttttaataccaactag 19691985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 38415175 - 38415087
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  38415175 tcaggcccggctctgaggggatgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaaattt-tttttaatacccactag 38415087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 479 - 565
Target Start/End: Original strand, 25010254 - 25010340
Alignment:
Q  479 aggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  25010254 aggcccggccctgagggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 25010340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 10329710 - 10329621
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||  ||||||||| ||||||||| ||||||| ||| || |||||||||||||||||||||| ||| |||||||||||||||||    
T  10329710 tcaggcccggtcctgagggggtgcaaacagttcaacagcgctaggtctccctcagtcatgggcctcaattttttttttaatacccactag 10329621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 23551355 - 23551283
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| ||| |||||||||||||||||    
T  23551355 ggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaattttttttttaatacccactag 23551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 28749597 - 28749647
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 543  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  28749597 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 10027615 - 10027667
Alignment:
Q  475 gatcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccc 526  Q
    ||||||| ||| ||||| || |||||||||||||| |||||||||||||||||    
T  10027615 gatcagggccggccctggggaggtgcaaacagctctacagagctgggcctccc 10027667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 12596479 - 12596443
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  12596479 ggggtgcaaacagctcaaacgagctgggcctccctca 12596443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 18777075 - 18777019
Alignment:
Q  487 ccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    |||||||| ||||||||||||||||  |||||||||||||||||   ||||||||||    
T  18777075 ccctgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 18777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 24969258 - 24969330
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  24969258 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactag 24969330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 481 - 565
Target Start/End: Original strand, 40089328 - 40089411
Alignment:
Q  481 gcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  40089328 gcccggccatgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 40089411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 16844843 - 16844916
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt-aatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  16844843 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaaatacccactag 16844916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 478 - 543
Target Start/End: Complemental strand, 38352554 - 38352489
Alignment:
Q  478 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 543  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 54083541 - 54083456
Alignment:
Q  481 gcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  54083541 gcccgtccctgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaattttttttttaatacccactag 54083456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 565
Target Start/End: Original strand, 32128408 - 32128480
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||||||||||||    
T  32128408 ggggtgcaaacagctcaacagagctgggcctccctcagttatggacctcaattttttttttaatacccactag 32128480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 2791044 - 2790952
Alignment:
Q  474 tgatcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||| || |||||||||    
T  2791044 tgatcaggcccgactctgagggggtgcaaacagctcaacagagctgggtctccctcagtcatggacgtcaatttttttttgaaaacccactag 2790952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 37777509 - 37777436
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||  ||| |||||||||||||||||    
T  37777509 ggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaatttttttttttaatacccactag 37777436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 19498313 - 19498400
Alignment:
Q  478 caggcccgaccctga-ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| |||||| |||||||||| |||||||||| |||||||||||| || ||||||||||||| ||| |||||||||||||||||    
T  19498313 caggcccggccctgacggggtgcaaatagctcaacagtgctgggcctcccccaatcatgggcctcaa-tttttttttaatacccactag 19498400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 496 - 560
Target Start/End: Original strand, 34027407 - 34027471
Alignment:
Q  496 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccc 560  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  34027407 gtgcaaactgctcaacagagctgggtctccctcagtcatgggcctcaattttttttttaataccc 34027471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 16882675 - 16882606
Alignment:
Q  495 ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||| |||||||||||||||||    
T  16882675 ggtgcaaacagctcaacagagctgggcttcccttagtcatgagcctcaa-tttttttttaatacccactag 16882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 552
Target Start/End: Original strand, 35463958 - 35464016
Alignment:
Q  494 gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttt 552  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||| ||||    
T  35463958 gggtgcaaacagctcaacagagctgggcctcccccagccatgggcatcaattttttttt 35464016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 54779441 - 54779490
Alignment:
Q  478 caggcccgaccctgaggg-gtgcaaacagctcaacagagctgggcctccc 526  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  54779441 caggcccggccctgagggagtgcaaacagctcaaccgagctgggcctccc 54779490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 38209894 - 38209842
Alignment:
Q  490 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    |||||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  38209894 tgaggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Original strand, 1105447 - 1105498
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  1105447 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 1105498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 564
Target Start/End: Complemental strand, 10431492 - 10431421
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccacta 564  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||   | ||||| ||||||||||    
T  10431492 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaaaaatattttttatacccacta 10431421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 9579525 - 9579483
Alignment:
Q  487 ccctgaggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  9579525 ccctgaggcgtgcaaacagctcaaacgagctgggcctccctca 9579483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 9585220 - 9585178
Alignment:
Q  487 ccctgaggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  9585220 ccctgaggcgtgcaaacagctcaaacgagctgggcctccctca 9585178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 45560754 - 45560704
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 543  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  45560754 ggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 526
Target Start/End: Complemental strand, 35780606 - 35780573
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccc 526  Q
    ||||||||||||||||||| ||||||||||||||    
T  35780606 ggggtgcaaacagctcaaccgagctgggcctccc 35780573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Original strand, 55255096 - 55255145
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  55255096 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 55255145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 5129033 - 5128997
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  5129033 ggggtgcaaacagctcaaacgagctgggcctccctca 5128997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 553
Target Start/End: Original strand, 17679233 - 17679293
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt 553  Q
    ||||||||||||||||||  |||||| ||||||||||   ||||||||||| ||| |||||    
T  17679233 ggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaattttattttt 17679293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 553
Target Start/End: Original strand, 47127997 - 47128057
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt 553  Q
    |||||||||||||| |||  |||||||||||||||||   ||||||||||| ||| |||||    
T  47127997 ggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaatttttttttt 47128057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 26715931 - 26716018
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 26716018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 561
Target Start/End: Complemental strand, 27507041 - 27506957
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccca 561  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27507041 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaataccca 27506957  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 476 - 561
Target Start/End: Original strand, 24410234 - 24410319
Alignment:
Q  476 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccca 561  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  24410234 atcaggcccgtccctaagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaataccca 24410319  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 561
Target Start/End: Original strand, 9045848 - 9045915
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccca 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  9045848 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaataccca 9045915  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 498 - 565
Target Start/End: Original strand, 8327488 - 8327554
Alignment:
Q  498 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  8327488 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactag 8327554  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 478 - 563
Target Start/End: Complemental strand, 10762865 - 10762779
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccact 563  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||    
T  10762865 cagggccggccctgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaattttttttttaatacccact 10762779  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 542
Target Start/End: Original strand, 4505695 - 4505744
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  ||||||||||||||||| | ||||||||||    
T  4505695 ggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctca 4505744  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Original strand, 3952915 - 3952966
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  3952915 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 3952966  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Original strand, 3155019 - 3155068
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  3155019 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3155068  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 524
Target Start/End: Complemental strand, 5952986 - 5952949
Alignment:
Q  487 ccctgaggggtgcaaacagctcaacagagctgggcctc 524  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  5952986 ccctgaggggtgcaaacagctcaaacgagctgggcctc 5952949  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Original strand, 6964808 - 6964857
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  6964808 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 6964857  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 53020 - 52968
Alignment:
Q  474 tgatcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctcc 525  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||||||||||    
T  53020 tgatcagggccgaccctgagggggtgcaagcagctctactgagctgggcctcc 52968  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 493 - 564
Target Start/End: Complemental strand, 16199076 - 16199005
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccacta 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  16199076 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccacta 16199005  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 27923885 - 27923972
Alignment:
Q  478 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||    
T  27923885 caggcccgtccctgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa-tttttttttaatacccactag 27923972  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 38869660 - 38869572
Alignment:
Q  477 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    ||||||||| || ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  38869660 tcaggcccggccatgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaaattt-tttttaatacccactag 38869572  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 7670728 - 7670814
Alignment:
Q  478 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||| ||||||| |||||||||    
T  7670728 caggcccggccctgaggggtgcaaacagctcaacagagttgggcctccctcagtcatgggtcttaa-tttttttttaacacccactag 7670814  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 496 - 565
Target Start/End: Original strand, 9364113 - 9364181
Alignment:
Q  496 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  9364113 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatatccactag 9364181  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 565
Target Start/End: Complemental strand, 40389831 - 40389745
Alignment:
Q  478 caggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||  || |||||||||||||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacagacctgggcctccctcagtcatggacctcaa--ttttttttaatacccactag 40389745  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 493 - 561
Target Start/End: Complemental strand, 16799606 - 16799539
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccca 561  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||| |||||    
T  16799606 ggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa-tttttttttaacaccca 16799539  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Complemental strand, 15480279 - 15480228
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  15480279 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 15480228  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 544
Target Start/End: Original strand, 19523109 - 19523160
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 544  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  19523109 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 19523160  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 34756664 - 34756615
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  34756664 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 34756615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 22987517 - 22987481
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  22987517 ggggtgcaaacagctcaaacgagctgggcctccctca 22987481  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 561
Target Start/End: Original strand, 30853282 - 30853350
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccca 561  Q
    ||||||||||||||||||  ||||||||||||| |||   |||| |||||| ||| ||||| |||||||    
T  30853282 ggggtgcaaacagctcaaacgagctgggcctccttcaaggatggacctcaatttttttttttataccca 30853350  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 31881640 - 31881604
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  31881640 ggggtgcaaacagctcaaacgagctgggcctccctca 31881604  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 542
Target Start/End: Original strand, 34855925 - 34855989
Alignment:
Q  478 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 542  Q
    |||||||| |||| |||| ||||||||||| ||  ||||||||||||||| ||  ||||||||||    
T  34855925 caggcccggcccttagggatgcaaacagctaaatggagctgggcctccctaaggtatgggcctca 34855989  T

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Target: scaffold0039 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 106379 - 106454
Alignment:
Q  478 caggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttt 552  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaatttttttt 106454  T

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Target: scaffold0027 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 4147 - 4236
Alignment:
Q  476 atcaggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactag 565  Q
    |||||| ||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||    
T  4147 atcagggccggccctgagagggtgcaaacagctcaacagagctgggcctcctccagtcatgggcctcaa-tttttttttaatacccactag 4236  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Original strand, 1027 - 1063
Alignment:
Q  493 ggggtgcaaacagctcaacagagctgggcctccctca 529  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1027 ggggtgcaaacagctcaaacgagctgggcctccctca 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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