View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13081_high_5 (Length: 341)
Name: NF13081_high_5
Description: NF13081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13081_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 31841774 - 31841433
Alignment:
| Q |
10 |
gcagagagtaaaagtgtact------tattgaatattgatcatgaagcatcaaaacagcaaaatccaaaaacacataataatgagtatatgcatcatctt |
103 |
Q |
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| T |
31841774 |
gcagagagtaaaagtgtactatgtcatattgaatattgatcatgaagcatcaaaacagcaaaatccaaaaacacataataatgaatatatgcatcatctt |
31841675 |
T |
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| Q |
104 |
tgtcaatagcatgacaaaataacaagatcaatgagataatgaagtgtacatgagagtgcacgtgtgtacaattaat-----------------gtataat |
186 |
Q |
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| T |
31841674 |
tgtcaatagcatgaaaaaataacaagatcaatgagataatgaagtgtacatgagagtgcacgtgtgtacaattaatgtatcggtcttacttatgtataat |
31841575 |
T |
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| Q |
187 |
aatgcaacttatgatgtcacaattagagcatcactcgtattactatatctgaagactgaaacctctgcagttannnnnnnngcttgttaaataagttatc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31841574 |
aatgcaacttatgatgtcacaattagagcatcactcgtattactatatctgaagactgaaacctctgcagtt-ttttttttgcttgttaaataagttatc |
31841476 |
T |
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| Q |
287 |
tgttaccagaacagaataattaataactagttaatgaatgaat |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841475 |
tgttaccagaacagaataattaataactagttaatgaatgaat |
31841433 |
T |
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