View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13081_high_6 (Length: 248)
Name: NF13081_high_6
Description: NF13081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13081_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9936011 - 9936245
Alignment:
| Q |
1 |
aatattatttggtatatatgacaacacctataaaatccnnnnnnnn-cttcagtaagaaaaatattaagtgcatggacactttccaaatcaatagccaat |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9936011 |
aatattatttggaatatatgacaacacctataaaatccaaaaaaaaacttcattaagaaaaatattaagtgcatggacactttccaaatcaatagccaat |
9936110 |
T |
|
| Q |
100 |
aagcacattccttttcatattctaaaattatatataagtgactctcctaaacataatgcatccttctttctccaccattttcagacccctcatacccatc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9936111 |
aagcacattccttttcatattctaaaattatatataagtgactccccttaacataatgcatccttctttctccaccattttcaaacccctcatacccatc |
9936210 |
T |
|
| Q |
200 |
acaa-tcataccaacaaaatcccaaactccaccgt |
233 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |
|
|
| T |
9936211 |
acaacccaaaccaacaaaatcccaaactccaccgt |
9936245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9966175 - 9966409
Alignment:
| Q |
1 |
aatattatttggtatatatgacaacacctataaaatccnnnnnnnn-cttcagtaagaaaaatattaagtgcatggacactttccaaatcaatagccaat |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9966175 |
aatattatttggaatatatgacaacacctataaaatccaaaaaaaaacttcattaagaaaaatattaagtgcatggacactttccaaatcaatagccaat |
9966274 |
T |
|
| Q |
100 |
aagcacattccttttcatattctaaaattatatataagtgactctcctaaacataatgcatccttctttctccaccattttcagacccctcatacccatc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9966275 |
aagcacattccttttcatattctaaaattatatataagtgactccccttaacataatgcatccttctttctccaccattttcaaacccctcatacccatc |
9966374 |
T |
|
| Q |
200 |
acaa-tcataccaacaaaatcccaaactccaccgt |
233 |
Q |
| |
|
|||| || ||||||| |||||||||||||||||| |
|
|
| T |
9966375 |
acaacccaaaccaacagaatcccaaactccaccgt |
9966409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University