View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13081_high_9 (Length: 223)
Name: NF13081_high_9
Description: NF13081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13081_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 36746834 - 36747020
Alignment:
| Q |
21 |
atgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataacattggctaaa |
120 |
Q |
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| T |
36746834 |
atgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataacattggctaaa |
36746933 |
T |
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| Q |
121 |
attctcaannnnnnnaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagccttt |
207 |
Q |
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| T |
36746934 |
attctcaatttttttaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagccttt |
36747020 |
T |
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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 12251744 - 12251816
Alignment:
| Q |
136 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttt |
208 |
Q |
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| T |
12251744 |
accttaggtttgcaaagagaactcctcaagtttgaaaaacatccatcacatacaatagtgagaggagcctttt |
12251816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 12404242 - 12404170
Alignment:
| Q |
136 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttt |
208 |
Q |
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| T |
12404242 |
accttaggtttgcaaagagaactcctcaaattagaaaaacagccatcgcatacaatagtgagaggagcctttt |
12404170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 47791191 - 47791127
Alignment:
| Q |
136 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagagg |
200 |
Q |
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| T |
47791191 |
accttaggattacaaagagaacggcgcaagtttgagaaacaaccatcacaaacaatggtaagagg |
47791127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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