View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13081_low_1 (Length: 840)

Name: NF13081_low_1
Description: NF13081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13081_low_1
NF13081_low_1
[»] chr5 (4 HSPs)
chr5 (419-839)||(18551476-18551897)
chr5 (183-340)||(18551982-18552140)
chr5 (56-114)||(18552200-18552259)
chr5 (766-821)||(41015009-41015064)
[»] chr1 (1 HSPs)
chr1 (759-825)||(392325-392391)
[»] chr8 (1 HSPs)
chr8 (763-834)||(27743147-27743220)
[»] chr6 (2 HSPs)
chr6 (761-834)||(33735428-33735501)
chr6 (761-825)||(7264837-7264901)
[»] chr2 (2 HSPs)
chr2 (761-835)||(28804331-28804405)
chr2 (801-834)||(27242770-27242803)
[»] chr3 (2 HSPs)
chr3 (801-834)||(2101651-2101684)
chr3 (731-824)||(20272961-20273054)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 419 - 839
Target Start/End: Complemental strand, 18551897 - 18551476
Alignment:
Q  419 tactttctcctaattcctattttgtttaatgattcattcttacaagtttaacttatgcttataattttcaatgaaattattt--gtatgatattgttgaa 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  18551897 tactttctcctaattcctattttgtttaatgattcattcttacaagtttaacttatgcttataattttcaattaaattatttatgtatgatattgttgaa 18551798  T
Q  517 cttaatactagtataaatcttgaattattcttttaagtattttgttaatattgtgtttctcacttttgatggaacagagttcacttgggatgatgtaaaa 616  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  18551797 cttaatactagtataaatcttgaattattcttttaattattttgttaatattgtgtttctcgcttttgatgga-cagagttcacttgggatgatgtaaaa 18551699  T
Q  617 gctgataaacacagggagaattatataggtcatagtctcaaggcccctgttggtagatggcagaaaggtaaacnnnnnnnnnnnnnnnnnaccttacctt 716  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                 ||||||||||    
T  18551698 gctgataaacacagggagaattatataggtcatagtctcaaggctcctgttggtagatggcagaaaggtaaactttttttcttttattttaccttacctt 18551599  T
Q  717 actcctttaattcatgtcaaatagcggctatagcgccattgagcagcagaattttaacaaacagctattgtttcgagaaatgcaatttagtacaaagtgt 816  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18551598 actcctttaattcatgtcaaatagcggctatagcgccattgagcagcagaattttaacaaacagctattgtttcgagatatgcaatttagtacaaagtgt 18551499  T
Q  817 tgtcaaataacgtctatagaaga 839  Q
    ||||| ||| |||||||||||||    
T  18551498 tgtcatatagcgtctatagaaga 18551476  T

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Target: chr5; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 183 - 340
Target Start/End: Complemental strand, 18552140 - 18551982
Alignment:
Q  183 gagtacaaattgagaacggcaagacgaacccc-tttcgtttttgttggaagaacgcagagtaaaaccgaaaatcaaattatttagaaaatcgcgtttgtc 281  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18552140 gagtacaaattgagaacggcaagacgaaccccctttcgtttttgttggaagaacgcagagtaaaaccgaaaatcaaattatttagaaaatcgcgtttgtc 18552041  T
Q  282 tgtagccaaacatgtatcatccaactcgaggtggcgtccgtggcggtcgagatcgtaag 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18552040 tgtagccaaacatgtatcatccaactcgaggtggcgtccgtggcggtcgagatcgtaag 18551982  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 18552259 - 18552200
Alignment:
Q  56 ttaaattattgattattgtttcttatcggagaaa-ataaattgtgttataaattaaaatt 114  Q
    ||||||||||||| ||||| |||||| ||||||| ||||||||||||| |||||||||||    
T  18552259 ttaaattattgatcattgtatcttatgggagaaagataaattgtgttaaaaattaaaatt 18552200  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 766 - 821
Target Start/End: Complemental strand, 41015064 - 41015009
Alignment:
Q  766 aattttaacaaacagctattgtttcgagaaatgcaatttagtacaaagtgttgtca 821  Q
    ||||| ||||||| ||||||||| || || |||| |||||||||||||||||||||    
T  41015064 aatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgttgtca 41015009  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 759 - 825
Target Start/End: Complemental strand, 392391 - 392325
Alignment:
Q  759 gcagcagaattttaacaaacagctattgtttcgagaaatgcaatttagtacaaagtgttgtcaaata 825  Q
    |||||||||||||||||||| ||||||||| || || |  |||| ||||||||||||||||||||||    
T  392391 gcagcagaattttaacaaactgctattgttccgcgatacacaatatagtacaaagtgttgtcaaata 392325  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 763 - 834
Target Start/End: Original strand, 27743147 - 27743220
Alignment:
Q  763 cagaattttaacaaacagctattgtttcgagaa-atgcaattta-gtacaaagtgttgtcaaataacgtctata 834  Q
    |||||||||||||||  ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||    
T  27743147 cagaattttaacaaattgctattgttccgcgaatatgcgatttaagtacaaagtgttgtcaaatagcgtctata 27743220  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 761 - 834
Target Start/End: Complemental strand, 33735501 - 33735428
Alignment:
Q  761 agcagaattttaacaaacagctattgtttcgagaaatgcaatttagtacaaagtgttgtcaaataacgtctata 834  Q
    ||||||||||||||||||  || ||||| || || |||| |||||||||||| |||||||||||| || |||||    
T  33735501 agcagaattttaacaaaccacttttgttccgtgatatgctatttagtacaaaatgttgtcaaatagcgactata 33735428  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 761 - 825
Target Start/End: Complemental strand, 7264901 - 7264837
Alignment:
Q  761 agcagaattttaacaaacagctattgtttcgagaaatgcaatttagtacaaagtgttgtcaaata 825  Q
    |||||||||||||||| | |||||||||| | || |||||||||| | | |||||||||||||||    
T  7264901 agcagaattttaacaatccgctattgttttgtgatatgcaatttattgcgaagtgttgtcaaata 7264837  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 761 - 835
Target Start/End: Original strand, 28804331 - 28804405
Alignment:
Q  761 agcagaattttaacaaacagctattgtttcgagaa-atgcaatttagtacaaagtgttgtcaaataacgtctatag 835  Q
    |||||||||| ||||||  ||||||||||| |||| | || |||||||||||||| ||||||||||||| ||||||    
T  28804331 agcagaatttgaacaaatcgctattgtttc-agaataagctatttagtacaaagtattgtcaaataacggctatag 28804405  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 834
Target Start/End: Complemental strand, 27242803 - 27242770
Alignment:
Q  801 atttagtacaaagtgttgtcaaataacgtctata 834  Q
    |||||||||||||||||||||||||||| |||||    
T  27242803 atttagtacaaagtgttgtcaaataacggctata 27242770  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 801 - 834
Target Start/End: Complemental strand, 2101684 - 2101651
Alignment:
Q  801 atttagtacaaagtgttgtcaaataacgtctata 834  Q
    |||||||||||||||||||||||||||| |||||    
T  2101684 atttagtacaaagtgttgtcaaataacggctata 2101651  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 824
Target Start/End: Complemental strand, 20273054 - 20272961
Alignment:
Q  731 tgtcaaatagcggctatagcgccattgagcagcagaattttaacaaacagctattgtttcgagaaatgcaatttagtacaaagtgttgtcaaat 824  Q
    |||||||||||||||||| | ||||   | ||||||||||  |||||| | || |||| || || ||||| ||||||| |||||||||||||||    
T  20273054 tgtcaaatagcggctataacaccataacgtagcagaatttggacaaactgttaatgttccgtgatatgcagtttagtataaagtgttgtcaaat 20272961  T

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