View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13081_low_2 (Length: 420)
Name: NF13081_low_2
Description: NF13081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13081_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 50408715 - 50408351
Alignment:
| Q |
18 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
117 |
Q |
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| T |
50408715 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
50408616 |
T |
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| Q |
118 |
tgagacagcaaaatgttgcacgcaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
217 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408615 |
tgagacagcaaaatgttggacacaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
50408516 |
T |
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| Q |
218 |
ttatcacatgattacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaa-ttgtttttcggttcctagtcat |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
50408515 |
ttatcacatgagtacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaatttttttttcggttcctagtcat |
50408416 |
T |
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| Q |
317 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattgaaacaccaatcaacattcaaca |
381 |
Q |
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| T |
50408415 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattcaaacaccaatcaacattcaaca |
50408351 |
T |
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