View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13081_low_3 (Length: 392)
Name: NF13081_low_3
Description: NF13081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13081_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 373
Target Start/End: Original strand, 41544519 - 41544884
Alignment:
| Q |
9 |
gataatactcgtatatcatatatacaaaattgtacttttgaagacaaataatgttaatgtatgagttaacttttattagcatttgtggtgatggagtttt |
108 |
Q |
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| T |
41544519 |
gataatactcgtatatcatatatacaaaattgtacttttgaagacaaataatgttaatgtatgagttaacttttattagcatttgtggtgatggagtttt |
41544618 |
T |
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| Q |
109 |
ttgggtatgtgaaggtggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaattctcatttgtgcaaaaaagcca |
208 |
Q |
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| T |
41544619 |
ttgggtatgtgaaggtggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaattctcatttgtgcaaaaaagcca |
41544718 |
T |
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| Q |
209 |
gtcacatagaggaaaaaccag-aaacttccactgcacaagaaactacagcccaagacaatgttgttggggataatgctatgttagagaataaagattcaa |
307 |
Q |
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| T |
41544719 |
gtcacatagaggaaaaaccagaaaacttccactgcacaagaaactatagcccaagacaatgttgttggggataatgctatgttagagaataaagattcaa |
41544818 |
T |
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| Q |
308 |
ttagtggaagtcttgattcagatgttatctttaatgtgaatgaattcttagactttcccactgaag |
373 |
Q |
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| T |
41544819 |
ttagtggaagtcttgattcagatgttatctttaatgtgaatgaattcttagactttcccactgaag |
41544884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 52071583 - 52071522
Alignment:
| Q |
124 |
tggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaa |
185 |
Q |
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| T |
52071583 |
tggtctctaatagctggaagactaccagggcgaacagacaatgaaatcaagaattattggaa |
52071522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 7195678 - 7195740
Alignment:
| Q |
124 |
tggtctttgatagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaat |
186 |
Q |
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| T |
7195678 |
tggtctttgatagctaagagactaccaggacgaacagacaatgaaatcaagaactactggaat |
7195740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 9622075 - 9622127
Alignment:
| Q |
133 |
atagcgggaagacttccagggcgaacagacaatgaaattaagaactattggaa |
185 |
Q |
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| T |
9622075 |
atagccggaagattaccaggacgaacagacaatgaaataaagaactactggaa |
9622127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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