View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13081_low_4 (Length: 342)
Name: NF13081_low_4
Description: NF13081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13081_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 43533243 - 43532927
Alignment:
| Q |
8 |
agattatacttgttgccggccttgttatcttcgttacctcacttccccaaattagaagaagaaagtttgaaattttctactacacacatcatttgtatat |
107 |
Q |
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| T |
43533243 |
agattacacttgttgccggccttgttatcttcgttacctcacttccccaaattagaagaagaaagtttgaaattttctactacacacatcatttgtatat |
43533144 |
T |
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| Q |
108 |
agtctttctagtatttttcttgtttcatgccggggataagcacttctatatggtcttcccaggagtgttcctttttagccttgacaaactgttacgtata |
207 |
Q |
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| T |
43533143 |
agtctttctagtatttttcttgtttcatgctggggataagcacttctatatggtcttcccaggagtgttcctttttagccttgacaaactgttacgtata |
43533044 |
T |
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| Q |
208 |
attcaatcaagtccaaaaacctgcatggtttcagctagaatttttccctgtgaagctgtggagctaattctgcctaaagatccaagtattaaatttatgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533043 |
attcaatcaagtccaaaaacctgcatggtttcagctagaatttttccctgtgaagctgtggagctaattctgcctaaagatccaagtattaaatttatgt |
43532944 |
T |
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| Q |
308 |
acagctatctcaaattg |
324 |
Q |
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||||||||||||||||| |
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| T |
43532943 |
acagctatctcaaattg |
43532927 |
T |
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