View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13082_high_4 (Length: 419)
Name: NF13082_high_4
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 33615345 - 33615622
Alignment:
| Q |
14 |
atatgattaaaagatatatataaacatttgatgtgatgaggtgtaggtttgaatccacaattttttacttctaagcacttagtgtctatacaagtttcgt |
113 |
Q |
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| T |
33615345 |
atataattaaaatatatgtataaacatttgatgtgatgaggtgtaggttcgaatccacaattttttacttctaagcacttagtgtctatatgagtttcgt |
33615444 |
T |
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| Q |
114 |
cgttggaccctttgaaaacaaaactacaaatactttatagaaaaacaataatataatcatcctatagtatgctctaacttctaatccaaatagttccatt |
213 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33615445 |
cgttggagcctttaaaaacaaaactacaaatactttatagaaaaacaataa-----tcatcctatagtatgctctaacttctaatccaaatagttccatt |
33615539 |
T |
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| Q |
214 |
tagcaaaagacaaacatgcatgcatgtgcaaccccttggcctataaattagttttcccatttctaattatgagcgtcccaacc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33615540 |
tagcaaaagacaaacatgcatgcatgtgcaaccccttggcctataaattagtttccccatttctaattatgagcgtcccaacc |
33615622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 294 - 402
Target Start/End: Original strand, 33615650 - 33615758
Alignment:
| Q |
294 |
acccataaagttaagtttggtgctatattttagaaccttagaggtagatatatccttagacaaaacagcgtttgaaaatggctggtggggttttaccagt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33615650 |
acccataaagttaagtttggtgctatattttagaaccttaaaggtagatatatccttagacaaaacagcgttcgaaaatggctggtggggttttaccagt |
33615749 |
T |
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| Q |
394 |
ggatagtac |
402 |
Q |
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| T |
33615750 |
ggatagtac |
33615758 |
T |
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