View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13082_high_8 (Length: 304)
Name: NF13082_high_8
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 47814364 - 47814627
Alignment:
| Q |
19 |
tggattacgtcctgtgaactctttggattctatgttgagatacaaacaagattttcattctaaggtgctcactcagattggtactaatagagtaaggggt |
118 |
Q |
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| T |
47814364 |
tggattacgtcctgtgaactctttggattctatgttgagatacaaacaagattttcattctaaggtgctcactcagattggtactaatagagtaaggggt |
47814463 |
T |
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| Q |
119 |
ggtagaggtagcagatgtgtaactagagccatatttcatcatttctcggagaaaccagtcaaagttattatgctggctcaagatgaagctaggcggctgg |
218 |
Q |
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| T |
47814464 |
ggtagaggtagcagatgtgtaactagagccatatttcatcatttctcggagaaaccagtcaaagttattatgctggctcaagatgaagctaggcggctgg |
47814563 |
T |
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| Q |
219 |
gacacaattttgtcggaacagaacaaattttgttgggtattattcgcgaaggcactggtattgg |
282 |
Q |
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| T |
47814564 |
gacacaattttgtcggaacagaacaaattttgttgggtattattcgcgaaggcactggtattgg |
47814627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 47378818 - 47379081
Alignment:
| Q |
19 |
tggattacgtcctgtgaactctttggattctatgttgagatacaaacaagattttcattctaaggtgctcactcagattggtactaatagagtaaggggt |
118 |
Q |
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| T |
47378818 |
tggattacgtcctttgaactctttggattctatgtttagacccagacaagattttcattctaaggtgctcactcagattggtactaatagagcaaggggt |
47378917 |
T |
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| Q |
119 |
ggtagaggtagcagatgtgtaactagagccatatttcatcatttctcggagaaaccagtcaaagttattatgctggctcaagatgaagctaggcggctgg |
218 |
Q |
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| T |
47378918 |
ggtagaggtagcagatgtgtaactagagccatgtttgagcgtttcacggagaaagcaatcaaagttattatgctggctcaagaggaagctaggcggcttg |
47379017 |
T |
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| Q |
219 |
gacacaattttgtcggaacagaacaaattttgttgggtattattcgcgaaggcactggtattgg |
282 |
Q |
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| T |
47379018 |
gtcacaattttgtcggaacagaacaaattttgttgggtcttattggtgaaggcactggtattgg |
47379081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 45110646 - 45110784
Alignment:
| Q |
141 |
ctagagccatatttcatcatttctcggagaaaccagtcaaagttattatgctggctcaagatgaagctaggcggctgggacacaattttgtcggaacaga |
240 |
Q |
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| T |
45110646 |
ctagagccatgtttgagcgtttcacagagaaagcaatcaaagtgataatgttagctcaagaggaagcaaggcgtcttggtcacaattttgttggaacaga |
45110745 |
T |
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| Q |
241 |
acaaattttgttgggtattattcgcgaaggcactggtat |
279 |
Q |
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| T |
45110746 |
gcagattctactgggtcttattggtgaaggcactggtat |
45110784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 40241911 - 40242172
Alignment:
| Q |
20 |
ggattacgtcctgtgaactctttggattctatgttgagatacaaacaagattttcattctaaggtgctcactcagattggtactaatagagtaaggggtg |
119 |
Q |
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||||||||| || |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |
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| T |
40241911 |
ggattacgtactttgaattctttggattcaatgttgagacctggccaagattttcattctaaggtgctcactcagattggtactaatcgagctaagggtg |
40242010 |
T |
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| Q |
120 |
gtagaggtagcagatgtgtaactagagccatatttcatcatttctcggagaaaccagtcaaagttattatgctggctcaagatgaagctaggcggctggg |
219 |
Q |
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|||||||||| |||||||| |||| |||||| ||| | | ||| |||||||| | |||||||||||||| ||||||| || ||||| ||||||||||| |
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| T |
40242011 |
gtagaggtagtagatgtgttactaaagccatgtttgagcgttttacggagaaagctatcaaagttattatgttggctcaggaggaagcaaggcggctggg |
40242110 |
T |
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| Q |
220 |
acacaattttgtcggaacagaacaaattttgttgggtattattcgcgaaggcactggtattg |
281 |
Q |
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|||||||||||| ||||| ||||| ||| | |||||| ||||| | ||||| |||||||||| |
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| T |
40242111 |
acacaattttgttggaactgaacagattctattgggtcttattggtgaaggaactggtattg |
40242172 |
T |
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