View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13082_low_1 (Length: 1142)
Name: NF13082_low_1
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 930; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 930; E-Value: 0
Query Start/End: Original strand, 1 - 1127
Target Start/End: Complemental strand, 43256181 - 43255075
Alignment:
| Q |
1 |
ttgagccagaatggttagcatacggcgagataatcaacggccgcttcgcaatgttgggagcagcaggagctatagcacctgaaattctcggcaaagcagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43256181 |
ttgagccagaatggttagcatacggcgagataatcaacggccgcttcgcaatgttgggagcagcaggagctatagcacctgaaattctcggcaaagcagg |
43256082 |
T |
|
| Q |
101 |
tttaattcccgcggaaacagcactcccttggttccaaaccggcgtgattccaccagcaggaacatacaactactgggcagacaattacacactctttgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43256081 |
tttaattcccgcggaaacagcactcccttggttccaaaccggcgtgattccaccagcaggaacatacaactactgggcagacaattacacactctttgtg |
43255982 |
T |
|
| Q |
201 |
atggaaatggcattcatgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43255981 |
atggaaatggcattcatgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaag |
43255882 |
T |
|
| Q |
301 |
ggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255881 |
ggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaa |
43255782 |
T |
|
| Q |
401 |
ggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcat |
500 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255781 |
ggaagttaagaatggaaggttagcaatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcat |
43255682 |
T |
|
| Q |
501 |
ttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggtt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
43255681 |
ttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggtt |
43255582 |
T |
|
| Q |
601 |
gctgtaagttataattattaacnnnnnnnctcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaaga |
700 |
Q |
| |
|
| |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
43255581 |
gttgtaagttataattattaccaaaaaaactcaaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtttcatgatgtggccttgtaaga |
43255482 |
T |
|
| Q |
701 |
aatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggt |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255481 |
aatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggt |
43255382 |
T |
|
| Q |
801 |
tccttttgttacttgcttgcccatcccaatccaaattccatcctccttacc----atgtcaccaccatcacatcttttgctgccaccgatccagatccac |
896 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || |
|
|
| T |
43255381 |
tccttttgttacttgcttgcccctcccaatccaaattccatcctccttaccatatatgtcaccaccatcacatcttttgcttgcccc------------- |
43255295 |
T |
|
| Q |
897 |
aaaacctcttcatttacatgatctttctcttttgctcgaaacacaatctctgtctcgactgagcgtcccccaccgaaaccaccacctcatgtgaaacaga |
996 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | || || |||||| |||||||||||| |
|
|
| T |
43255294 |
---acctcttcatttacatgatctttctcttttgctcgaaacacaatctctgtctcgaccga------ccgagcg--tcccccaccttatgtgaaacaga |
43255206 |
T |
|
| Q |
997 |
tcctccactttggtctaccggatctgccatcgccgtctattttgaaacttgtctcggcatcctatccaccatcgctgcccagccttgtacggccgccgcg |
1096 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43255205 |
tcctccactttggtctaccggatctgccatcgccgtctattttgaaacttgtctcggcatcctatccaccatcgctgcccagccttgtatggccgccgcg |
43255106 |
T |
|
| Q |
1097 |
aaagcctcccgaagaatttcgaacaactttg |
1127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43255105 |
aaagcctcccgaagaatttcgaacaactttg |
43255075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 11 - 760
Target Start/End: Complemental strand, 43259437 - 43258688
Alignment:
| Q |
11 |
atggttagcatacggcgagataatcaacggccgcttcgcaatgttgggagcagcaggagctatagcacctgaaattctcggcaaagcaggtttaattccc |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43259437 |
atggttagcatacggtgagataatcaacggccgatttgcaatgttgggagcagccggagctatagcacctgaaattcttggcaaagcaggtttaattccc |
43259338 |
T |
|
| Q |
111 |
gcggaaacagcactcccttggttccaaaccggcgtgattccaccagcaggaacatacaactactgggcagacaattacacactctttgtgatggaaatgg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43259337 |
gcggaaacagcactcccttggttccaaaccggcgtgattccaccagcgggaacatacaactactgggcagacaattacacactctttgtgatggaaatgg |
43259238 |
T |
|
| Q |
211 |
cattcatgggatttgcagaacacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggagg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43259237 |
cattcatgggatttgcagaacacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggagg |
43259138 |
T |
|
| Q |
311 |
ttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaag |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43259137 |
ttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaggaattaaagctgaaggaagttaag |
43259038 |
T |
|
| Q |
411 |
aatggaagattagctatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgacc |
510 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43259037 |
aatggaaggttagcaatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgacc |
43258938 |
T |
|
| Q |
511 |
ctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggttgctgtaagtt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
43258937 |
ctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggttgttgtaagtt |
43258838 |
T |
|
| Q |
611 |
ataattattaacnnnnnnnctcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacattt |
710 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43258837 |
ataattattaccaaaaaaactcaaccaccttttcttcactttcttgtcttagcatcttgtgagcatgtttcatgatgtggccttgtaagaaatgacattt |
43258738 |
T |
|
| Q |
711 |
acaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
760 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43258737 |
acaagaactagaaatattcagcatctttgtgtgttaacttctttgttgca |
43258688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 267 - 570
Target Start/End: Complemental strand, 43247918 - 43247615
Alignment:
| Q |
267 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
366 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
|
| Q |
367 |
aagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttac |
466 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
43247818 |
aagatgagaaatcattgaaggatttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttac |
43247719 |
T |
|
| Q |
467 |
aggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
566 |
Q |
| |
|
| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43247718 |
aagagttggaccataccaaaacttcttaaatcatttggctgacccttcaaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
43247619 |
T |
|
| Q |
567 |
atat |
570 |
Q |
| |
|
|||| |
|
|
| T |
43247618 |
atat |
43247615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 434 - 529
Target Start/End: Complemental strand, 43234059 - 43233964
Alignment:
| Q |
434 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatctt |
529 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttggctgaccctttcaacaacaacatctt |
43233964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 516 - 570
Target Start/End: Complemental strand, 43254144 - 43254090
Alignment:
| Q |
516 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43254144 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
43254090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 698 - 760
Target Start/End: Complemental strand, 43226066 - 43226006
Alignment:
| Q |
698 |
agaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
760 |
Q |
| |
|
||||||||||| |||||||||||||| |||| | |||| |||||||||||||||||||||| |
|
|
| T |
43226066 |
agaaatgacatgtacaagaactagaaatattcggtatct--gtgtgttaacttctttgttgca |
43226006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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