View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13082_low_11 (Length: 236)
Name: NF13082_low_11
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_low_11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 49974531 - 49974754
Alignment:
| Q |
15 |
agtagtaatgaatagttgcttctgcaatctgcatatatatacggataacactaagcaaccatataaagtagtcattagaggtcgattctttgcgagaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49974531 |
agtagtaatgaatagttgcttctgcaatctgcatatatatacggataacactaagcaaccatataaagtagtcattagaggtcgattctttgcgagaaat |
49974630 |
T |
|
| Q |
115 |
acatctaagcatatatcaagtaatgacagagaatgaaataataatgaaattcaaatccgtttctctgatcaatgtata--ttttttgaaaaggactatgt |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49974631 |
acatctcagcatatatcaagtaatgacagagaatgaaataataatgaaattcaaatccgtttctctgatcaatgtataatttttttgaaaaggactatgt |
49974730 |
T |
|
| Q |
213 |
atatgtcatctatgagatatacca |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49974731 |
atatgtcatctatgagatatacca |
49974754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University