View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13082_low_13 (Length: 232)

Name: NF13082_low_13
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13082_low_13
NF13082_low_13
[»] chr3 (12 HSPs)
chr3 (13-80)||(7536137-7536204)
chr3 (154-216)||(7536278-7536340)
chr3 (154-214)||(12144884-12144944)
chr3 (21-76)||(15987590-15987645)
chr3 (25-76)||(27717993-27718044)
chr3 (31-76)||(17132724-17132769)
chr3 (21-76)||(12145025-12145080)
chr3 (21-76)||(14132136-14132191)
chr3 (21-76)||(17439140-17439195)
chr3 (27-76)||(45279945-45279994)
chr3 (44-76)||(1745110-1745142)
chr3 (183-211)||(15987464-15987492)
[»] scaffold0167 (2 HSPs)
scaffold0167 (154-216)||(663-725)
scaffold0167 (21-72)||(10313-10364)
[»] chr8 (10 HSPs)
chr8 (21-76)||(23355475-23355530)
chr8 (21-80)||(32352201-32352260)
chr8 (21-80)||(32368862-32368921)
chr8 (21-72)||(41652030-41652081)
chr8 (21-76)||(19709519-19709574)
chr8 (21-76)||(22450050-22450105)
chr8 (160-211)||(19709653-19709704)
chr8 (28-76)||(5892619-5892667)
chr8 (21-76)||(28291589-28291644)
chr8 (163-211)||(41652167-41652215)
[»] chr2 (8 HSPs)
chr2 (21-75)||(17636730-17636784)
chr2 (21-75)||(17676588-17676642)
chr2 (21-76)||(2482043-2482098)
chr2 (21-72)||(15438065-15438116)
chr2 (21-76)||(21498143-21498198)
chr2 (14-76)||(32890418-32890480)
chr2 (23-76)||(17162024-17162077)
chr2 (160-210)||(15438204-15438253)
[»] chr5 (9 HSPs)
chr5 (155-211)||(22987620-22987676)
chr5 (22-76)||(22987751-22987805)
chr5 (21-76)||(24663575-24663630)
chr5 (21-76)||(31533059-31533114)
chr5 (21-76)||(25667297-25667352)
chr5 (37-76)||(22848040-22848079)
chr5 (21-76)||(24309074-24309129)
chr5 (21-76)||(24364197-24364252)
chr5 (38-76)||(21390682-21390720)
[»] scaffold0024 (1 HSPs)
scaffold0024 (21-76)||(38924-38979)
[»] chr4 (4 HSPs)
chr4 (21-76)||(24924894-24924949)
chr4 (25-80)||(4697489-4697544)
chr4 (21-76)||(26654153-26654208)
chr4 (25-72)||(16288771-16288818)
[»] chr6 (10 HSPs)
chr6 (160-209)||(1469417-1469466)
chr6 (21-76)||(28712397-28712452)
chr6 (21-76)||(16142870-16142925)
chr6 (21-68)||(24154186-24154233)
chr6 (31-72)||(16143180-16143221)
chr6 (160-211)||(242198-242249)
chr6 (21-76)||(16142566-16142621)
chr6 (21-76)||(17352724-17352779)
chr6 (21-76)||(19723901-19723956)
chr6 (21-65)||(13002863-13002907)
[»] chr7 (12 HSPs)
chr7 (21-76)||(1545651-1545706)
chr7 (21-76)||(7524769-7524824)
chr7 (31-80)||(25621139-25621188)
chr7 (160-216)||(4978996-4979052)
chr7 (160-208)||(25621265-25621313)
chr7 (25-76)||(5531768-5531819)
chr7 (21-62)||(41131963-41132004)
chr7 (21-77)||(9022567-9022623)
chr7 (27-76)||(7948047-7948096)
chr7 (32-76)||(12468948-12468992)
chr7 (24-76)||(18046409-18046461)
chr7 (163-211)||(28037056-28037104)
[»] scaffold0320 (1 HSPs)
scaffold0320 (14-72)||(6420-6478)
[»] scaffold0039 (2 HSPs)
scaffold0039 (14-76)||(48267-48329)
scaffold0039 (21-76)||(33279-33334)
[»] chr1 (4 HSPs)
chr1 (21-67)||(23455188-23455234)
chr1 (163-211)||(33379511-33379559)
chr1 (21-72)||(24633331-24633382)
chr1 (27-68)||(11821861-11821902)
[»] scaffold1024 (1 HSPs)
scaffold1024 (21-67)||(2981-3027)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 7536137 - 7536204
Alignment:
Q  13 aagaatatagtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaatacaa 80  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7536137 aagaaaatagtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaatacaa 7536204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 7536278 - 7536340
Alignment:
Q  154 cctgttgagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctataaact 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7536278 cctgtcgagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctataaact 7536340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 12144944 - 12144884
Alignment:
Q  154 cctgttgagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctataaa 214  Q
    ||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  12144944 cctgtcgagagacagttattttcttacaaaacttcatcttgttcataaagcaatctataaa 12144884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 15987645 - 15987590
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  15987645 agtcatacaaaatgtatgtaatctgatttgtcgaaccacatttacattaatgcaat 15987590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 27717993 - 27718044
Alignment:
Q  25 atacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||| |||||||||||| |||||| ||||| ||||||||||||||||||||    
T  27717993 atacagaatgtatgtaatctgatttatcgaaccacctttacattaatgcaat 27718044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 17132769 - 17132724
Alignment:
Q  31 aatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  17132769 aatgtatgtaacttgatttgtcgaaccacctttactttaatgcaat 17132724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 12145080 - 12145025
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||||||||| | |||||||  | ||||||||||||||| ||||    
T  12145080 agtcatacaaaatgtatgtaatctaatttgtcataccacctttacattaatacaat 12145025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 14132136 - 14132191
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||||||||| |||||| | ||| || | |||||||||||||||    
T  14132136 agtcatacaaaatgtatgtaatctgatttattgaaccatcgttacattaatgcaat 14132191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 17439140 - 17439195
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| ||||| |||||||| ||||||||||||  || ||||||||||||||||    
T  17439140 agtcatataaaatatatgtaatctgatttgtcgaactacatttacattaatgcaat 17439195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 45279945 - 45279994
Alignment:
Q  27 acaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||| |||||||||||| ||| | ||| ||||||||||    
T  45279945 acaaaatgtatgtaatctgatttgtcgaaccacatctactttaatgcaat 45279994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 1745142 - 1745110
Alignment:
Q  44 tgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| |||||||||||||||||||||||    
T  1745142 tgatttgtctaatcacctttacattaatgcaat 1745110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 15987492 - 15987464
Alignment:
Q  183 aacttcatcttgttcataaagcaacctat 211  Q
    |||||||||||||||||||||||||||||    
T  15987492 aacttcatcttgttcataaagcaacctat 15987464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 663 - 725
Alignment:
Q  154 cctgttgagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctataaact 216  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  663 cctgtcgagagacaattattttcttgcaaaacttcatcctgttcataaagcaacctatgaact 725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 10313 - 10364
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatg 72  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||||||||    
T  10313 agtcatacataatgtatgtaatctgatttgtcaaaccacctttacattaatg 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 23355530 - 23355475
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  23355530 agtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaat 23355475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 32352260 - 32352201
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaatacaa 80  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||    
T  32352260 agtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacattaatgtaatacaa 32352201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 32368921 - 32368862
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaatacaa 80  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||||||||| |||||||    
T  32368921 agtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacattaatgtaatacaa 32368862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 41652030 - 41652081
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatg 72  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  41652030 agtcatacagaatgtatgtaatttgatttgtcgaaccacctttacattaatg 41652081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 19709519 - 19709574
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  19709519 agtcatagataatgtatgtaatttgatttgtcgaaccacatttacattaatgcaat 19709574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 22450050 - 22450105
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  22450050 agtcatacaaaatgtatgtaatctgatttgtcgaaccacattaacattaatgcaat 22450105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 19709653 - 19709704
Alignment:
Q  160 gagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctat 211  Q
    ||||||||||||||||| | |||||||||||||| ||||||||| |||||||    
T  19709653 gagagacaattattttcgtacaaaacttcatcttcttcataaagaaacctat 19709704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 5892667 - 5892619
Alignment:
Q  28 caaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||||||||||| | | ||| ||||||||||||||||    
T  5892667 caaaatgtatgtaatttgatttgttgtaccacatttacattaatgcaat 5892619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 28291589 - 28291644
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| | ||||| |||||| ||||||||||||  |||||||||||||||||||    
T  28291589 agtcatatagaatgtgtgtaatctgatttgtcgaacaacctttacattaatgcaat 28291644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 41652167 - 41652215
Alignment:
Q  163 agacaattattttcttgcaaaacttcatcttgttcataaagcaacctat 211  Q
    ||||| |||||||| | || |||||| ||||||||||||||||||||||    
T  41652167 agacatttattttcatacacaacttcgtcttgttcataaagcaacctat 41652215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 17636784 - 17636730
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaa 75  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  17636784 agtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaa 17636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 17676642 - 17676588
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaa 75  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  17676642 agtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaa 17676588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2482098 - 2482043
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||  ||||||||||||||||||||||||| || |||||||||||||||||    
T  2482098 agtcatacggaatgtatgtaatttgatttgtcgaaccatctttacattaatgcaat 2482043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 15438065 - 15438116
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatg 72  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||    
T  15438065 agtcatacagaatgtatgtaatttgatttgtcgaaccaccattacattaatg 15438116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 21498143 - 21498198
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| || ||||||||| |||||||||||| ||| ||||||||||||||||    
T  21498143 agtcatacataacgtatgtaatctgatttgtcgaaccacttttacattaatgcaat 21498198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 32890480 - 32890418
Alignment:
Q  14 agaatatagtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||| ||||||||||| |||||||||||| | ||||||| || ||| ||||||||||||||||    
T  32890480 agaaaatagtcatacataatgtatgtaatcttatttgtcaaaccacttttacattaatgcaat 32890418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 17162024 - 17162077
Alignment:
Q  23 tcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| |||||||||||| |||||||||||  |||||||| |||||||||||    
T  17162024 tcatacagaatgtatgtaatctgatttgtcgagccacctttatattaatgcaat 17162077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 15438204 - 15438253
Alignment:
Q  160 gagagacaattattttcttgcaaaacttcatcttgttcataaagcaaccta 210  Q
    |||||||| ||||||||||||||| |||||| | |||||||||||||||||    
T  15438204 gagagacagttattttcttgcaaagcttcat-tagttcataaagcaaccta 15438253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 22987676 - 22987620
Alignment:
Q  155 ctgttgagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctat 211  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  22987676 ctgttgagagacaattattttcgtacaaaacttcatcttgtttataaagcaacctat 22987620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 22987805 - 22987751
Alignment:
Q  22 gtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  22987805 gtcatacaaaatgtatgtaatctgatatgtcgaaccacctttacattaatgcaat 22987751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24663630 - 24663575
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  24663630 agtcatacataatgtatgtaatctgatttgttgaaccacctttacattaatgcaat 24663575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 31533059 - 31533114
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||    
T  31533059 agtcatagagaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaat 31533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 25667297 - 25667352
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||||||||| ||||||||| ||||||||| ||||| ||| ||||||||||    
T  25667297 agtcatacaaaatgtgtgtaatttgttttgtcgaaccacctatactttaatgcaat 25667352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 22848079 - 22848040
Alignment:
Q  37 tgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  22848079 tgtaatctgatttgtcgaatcacctttatattaatgcaat 22848040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24309129 - 24309074
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| ||| |||||||| ||||||||||||  |||||||||||||| ||||    
T  24309129 agtcatacagaatatatgtaatctgatttgtcgaactacctttacattaatacaat 24309074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 24364197 - 24364252
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| ||| |||||||| ||||||||||||  |||||||||||||| ||||    
T  24364197 agtcatacagaatatatgtaatctgatttgtcgaactacctttacattaatacaat 24364252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 21390720 - 21390682
Alignment:
Q  38 gtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  21390720 gtaagttgatttgtcgaaccacctttacattaatgcaat 21390682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 38924 - 38979
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  38924 agtcatataaaatgtatgtaatctgatttgtcgaaccacctttacattaatgcaat 38979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24924949 - 24924894
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  24924949 agtcatacataatgtatgtaatctgatttgtcgaaccacctttacattaatgcaat 24924894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 4697544 - 4697489
Alignment:
Q  25 atacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaatacaa 80  Q
    |||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||    
T  4697544 atacaaaatgtatgtaatctgattcgtcgaaccacctttactttaatgcaatacaa 4697489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 26654153 - 26654208
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| |||||||||||| |||||||||||| ||||||| ||||||||||||    
T  26654153 agtcatacataatgtatgtaatatgatttgtcgaaccacctttgcattaatgcaat 26654208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 16288818 - 16288771
Alignment:
Q  25 atacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatg 72  Q
    |||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  16288818 atacaaaatgtatgtaatctgatttgttgaaccacctttacattaatg 16288771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 1469417 - 1469466
Alignment:
Q  160 gagagacaattattttcttgcaaaacttcatcttgttcataaagcaacct 209  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  1469417 gagagacagttattttcttacaaaacttcatcttgttcataaagcaacct 1469466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 28712452 - 28712397
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||    
T  28712452 agtcatatataatgtatgtaatctgatttgtcgaaccacctttacattaatgcaat 28712397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 16142925 - 16142870
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| |||||||||||| ||  |||||||| ||||||||||||||||||||    
T  16142925 agtcatacagaatgtatgtaatctgcattgtcgaaccacctttacattaatgcaat 16142870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 24154186 - 24154233
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacatt 68  Q
    |||||||||||||||||||||  |||||||||||| ||||||||||||    
T  24154186 agtcatacaaaatgtatgtaaactgatttgtcgaaccacctttacatt 24154233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 16143221 - 16143180
Alignment:
Q  31 aatgtatgtaatttgatttgtcgaatcacctttacattaatg 72  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  16143221 aatgtatgtaatctgatttgtcgaaccacctttacattaatg 16143180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 242198 - 242249
Alignment:
Q  160 gagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctat 211  Q
    ||||||||||| ||||||| ||||||||| || ||||||||||| |||||||    
T  242198 gagagacaatttttttcttacaaaacttcttcatgttcataaagtaacctat 242249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 16142621 - 16142566
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||| | |||||||||||| ||  |||||||| ||||||||||||||||||||    
T  16142621 agtcatatagaatgtatgtaatctgcattgtcgaaccacctttacattaatgcaat 16142566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 17352779 - 17352724
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| ||||  |||||| |||||||||||| ||| ||||||||||||||||    
T  17352779 agtcatacataatgcttgtaatctgatttgtcgaaccacatttacattaatgcaat 17352724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 19723901 - 19723956
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| |||||||||||| |||||||  |||  |||||||||||||||||||    
T  19723901 agtcatacataatgtatgtaatctgatttgatgaactacctttacattaatgcaat 19723956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 13002863 - 13002907
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttac 65  Q
    ||||||||| |||||||||||  |||||||||||| |||||||||    
T  13002863 agtcatacagaatgtatgtaaactgatttgtcgaaccacctttac 13002907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 1545651 - 1545706
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||||||||||| |||| |||||||||||| ||| ||||||||||||||||    
T  1545651 agtcatacaaaatgtatataatctgatttgtcgaaccacatttacattaatgcaat 1545706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 7524769 - 7524824
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||||    
T  7524769 agtcatacataatttatgtaatctgatttgtcgaaccacctttacattaatgcaat 7524824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 25621139 - 25621188
Alignment:
Q  31 aatgtatgtaatttgatttgtcgaatcacctttacattaatgcaatacaa 80  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  25621139 aatgtatgtaatctaatttgtcgaaccacctttacattaatgcaatacaa 25621188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 4978996 - 4979052
Alignment:
Q  160 gagagacaattattttcttgcaaaacttcatcttgttcataaagcaacctataaact 216  Q
    ||||| ||||||||||||| |||||||||||| |||||||||| |||| ||||||||    
T  4978996 gagaggcaattattttcttacaaaacttcatcctgttcataaaacaacttataaact 4979052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 25621265 - 25621313
Alignment:
Q  160 gagagacaattattttcttgcaaaacttcatcttgttcataaagcaacc 208  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  25621265 gagagacaattattttcttacaaaactccatcctgttcataaagcaacc 25621313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 5531768 - 5531819
Alignment:
Q  25 atacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||||| || |||||| || ||||||||||||||||||||    
T  5531768 atacaaaatgtatgtaatctggtttgtctaaccacctttacattaatgcaat 5531819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 41132004 - 41131963
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctt 62  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  41132004 agtcatacaaaatgtatgtaatctgatttgtcgaaccacctt 41131963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 9022567 - 9022623
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaata 77  Q
    ||||||||| |||||||||||| |||||| ||||| ||||||||  |||||||||||    
T  9022567 agtcatacagaatgtatgtaatctgatttctcgaaccacctttattttaatgcaata 9022623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 7948047 - 7948096
Alignment:
Q  27 acaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||||||||||||| ||||||||| || ||  ||||||||||||||||    
T  7948047 acaaaatgtatgtaatctgatttgtcaaaccatatttacattaatgcaat 7948096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 12468992 - 12468948
Alignment:
Q  32 atgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||||| |||||||||||| ||| ||||| ||||||||||    
T  12468992 atgtatgtaatctgatttgtcgaaccacatttactttaatgcaat 12468948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 18046461 - 18046409
Alignment:
Q  24 catacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||| ||||| |||||| |||||||||||| ||||||||  ||||||||||    
T  18046461 catacataatgtgtgtaatatgatttgtcgaaccacctttattttaatgcaat 18046409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 28037104 - 28037056
Alignment:
Q  163 agacaattattttcttgcaaaacttcatcttgttcataaagcaacctat 211  Q
    |||||||||||||| | || ||||| |||||||| ||||||||||||||    
T  28037104 agacaattattttcatacacaactttatcttgtttataaagcaacctat 28037056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 6478 - 6420
Alignment:
Q  14 agaatatagtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatg 72  Q
    |||| ||||||||||| |||||||||||| |||||||||||| | ||||||||||||||    
T  6478 agaaaatagtcatacataatgtatgtaatctgatttgtcgaaccgcctttacattaatg 6420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 48329 - 48267
Alignment:
Q  14 agaatatagtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    |||||| ||||||||| |||||||||||| |||||||||||| ||| ||||||||| ||||||    
T  48329 agaatagagtcatacagaatgtatgtaatctgatttgtcgaaccacttttacattattgcaat 48267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 33279 - 33334
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatgcaat 76  Q
    ||||||||| |||||||||||| ||| |||||||| ||| ||||||||||||||||    
T  33279 agtcatacataatgtatgtaatatgaattgtcgaaccacttttacattaatgcaat 33334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 23455234 - 23455188
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacat 67  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  23455234 agtcatacaaaatgtatgtaatatgatttgtcgaaccacctttacat 23455188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 33379511 - 33379559
Alignment:
Q  163 agacaattattttcttgcaaaacttcatcttgttcataaagcaacctat 211  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||    
T  33379511 agacaattattttcatacacaacttcatcttgttcataaagcaacctat 33379559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 24633331 - 24633382
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacattaatg 72  Q
    ||||||||| |||||||||||| |||||||| ||| || |||||||||||||    
T  24633331 agtcatacataatgtatgtaatctgatttgtagaaccaactttacattaatg 24633382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 11821902 - 11821861
Alignment:
Q  27 acaaaatgtatgtaatttgatttgtcgaatcacctttacatt 68  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||    
T  11821902 acaaaatgtatgtaacttgatttatcgaaccacctttacatt 11821861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 2981 - 3027
Alignment:
Q  21 agtcatacaaaatgtatgtaatttgatttgtcgaatcacctttacat 67  Q
    ||||||||||||| ||| |||| |||||||||||| |||||||||||    
T  2981 agtcatacaaaatatatttaatatgatttgtcgaaccacctttacat 3027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University