View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13082_low_2 (Length: 674)
Name: NF13082_low_2
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 11 - 658
Target Start/End: Complemental strand, 42088303 - 42087656
Alignment:
| Q |
11 |
cagagacgtgtggcatgaacgtgacaactcgtgacaagtaaagagttccttctacaaatgaaatagatagggccattagatgtcctacaacaagtaaact |
110 |
Q |
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| T |
42088303 |
cagagacgtgtggcatgaacgtgacaactcgtgacaagtaaagagttccttctacaaatgaaatagataaggccattagatgtcctacaacaagtaaact |
42088204 |
T |
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| Q |
111 |
aacaaagataatttcttgagtgcttcttttccaactctatgagcttctcgtgtgttttatgcagtttaggttatataatccgaacaatacagacagccta |
210 |
Q |
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| T |
42088203 |
aacaaagataatttcttgagtgcttcttttccaactctatgagtttctcgtgtgtcttatgcagttcaggttatataatctgaacgatacagacattccc |
42088104 |
T |
|
| Q |
211 |
taaaaaattcttaaaacgcgtttgaaatattttgaatgttaaaattagaataggacgcatgagaaactcgtagagtgagaaaagtaacggtctacgtttt |
310 |
Q |
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| T |
42088103 |
taaaaacttctaaaaatacgtttgaaatattttagattttaaaatcagaataggacgcacgaaaaactcatagagtgagaaaagtaacggtctactttct |
42088004 |
T |
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| Q |
311 |
ttctacctagcaaataaaaagatagtaagcaccacacgttttctagtaccataagtcactatgatccttcctttacaagttccaataacgtgatacaaat |
410 |
Q |
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| T |
42088003 |
ttctacctagcaaataaaaagatagtaagcaccacacgttttctagtaccataagtcactatgatccttcctttacaagttccaataacgtgatacaaat |
42087904 |
T |
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| Q |
411 |
aaccttgacatacattcttttttagctatatatattctacatcctattccccctcaccaaattttaatcttttttattattaaacaaatcttccttcaaa |
510 |
Q |
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| T |
42087903 |
aaccttgacatacattcttttttagctatatatattctacatcctattccccctcaacaaattttaatcttttttattattaaacaaatcttccttcaaa |
42087804 |
T |
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| Q |
511 |
ttccgaaaattcaaaacttaggccttagccatatataatatgatggaggaagaagagaatattcatgaagggtttaaaggaaaaaatgttgaaagcatga |
610 |
Q |
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| T |
42087803 |
ttccaaaaattcaaaacttaggccttagccatatataatatgatggaggaagaagagaatattcatgaagggtttaaaggaaaaaatgttgaaagcatga |
42087704 |
T |
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| Q |
611 |
gttgcttggagacacctcagaattcaaagaagaaaaacaagaagatag |
658 |
Q |
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| T |
42087703 |
gttgcttagagacacctcagaattcaaagaagaaaaacaagaagatag |
42087656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 13019597 - 13019661
Alignment:
| Q |
131 |
tgcttcttttccaactctatgagcttctcgtgtgttttatgcagtttaggttatataatccgaac |
195 |
Q |
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| T |
13019597 |
tgcttcttttcccactctatgaacttctcatgcgtcctatgcagtttggattatagaatccgaac |
13019661 |
T |
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