View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13082_low_3 (Length: 593)
Name: NF13082_low_3
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 47814637 - 47815220
Alignment:
| Q |
1 |
tctaaagtctatgggaattaacctgaaagactctcgcgtggaagtcgaaaagataattggaaggggtagtggttttgtcgctgttgagattccgtttact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47814637 |
tctaaagtctatgggaattaacctgaaagactctcgcgtggaagtcgaaaagataattggaaggggtagtggttttgtcgctgttgagattccgtttact |
47814736 |
T |
|
| Q |
101 |
ccacgtgccaagagagttttggaactctcattggaggaagctcgccaacttggtaaacgatagcatacctttatatgtcgtttttcatatcaaatcaatt |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
47814737 |
ccgcgtgccaagagagttttggaactctcattggaggaagctcgccaacttggtaaacgatagcatatctttatatgtcgtttttcatatcaaatcaatt |
47814836 |
T |
|
| Q |
201 |
atactttgtttatgaaaattgtgttcatgacttatttattatttatatgatttattccaaacatgccttgattgttgctatgattgatctgatggttgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47814837 |
atactttgtttatgaaaattgtgttcatgacttatttattatttatatgatttattccaaacatgccttgattgttgctatgattgatctgatggttgac |
47814936 |
T |
|
| Q |
301 |
caatttgaattaaatacattcaaagtgagtttaaattgaattgttggtagtttatttttgacccgtctttccgctctttcttttattttgagtgtgatta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47814937 |
caatttgaattaaatacattcaaagtgagtttaaattgaattgttggtagtttatttttgacccgtctttccgctctttcttttattttgagtgtgatta |
47815036 |
T |
|
| Q |
401 |
aaattttgtattcctttacgcttgctgaaattttgccttacattttggaatttctaggtcacaattatattggaactgagaacctgcttttggatcttct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47815037 |
aaattttgtattcctttacgcttgctgaaattttgccttacattttggaatttctaggtcacaattatattggaactgagaacctgcttttggatcttct |
47815136 |
T |
|
| Q |
501 |
tcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggcgatgatccaacggatattcgcacccaggctagtattat |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47815137 |
tcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggcgatgatccaactaatattcgcacccaggctagtattat |
47815220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 47379091 - 47379689
Alignment:
| Q |
1 |
tctaaagtctatgggaattaacctgaaagactctcgcgtggaagtcgaaaagataattggaaggggtagtggttttgtcgctgttgagattccgtttact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
47379091 |
tctaaagtctatgggaattaacctgaaagactctcgcgtggaagttgaaaagataattggaaggggtagcggttttgttgctgttgagattccgtttact |
47379190 |
T |
|
| Q |
101 |
ccacgtgccaagagagttttggaactctcattggaggaagctcgccaacttggtaaacgatagcatacctttatatgtcgtttttcatatcaaatcaatt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47379191 |
ccgcgtgccaagagagttttggaactctcattggaggaagctcgccaacttggtaagtgatagcatacctttatatgtcgtttttcatatcaaatcaatt |
47379290 |
T |
|
| Q |
201 |
atactttgttta--tgaaaattgtgttcatgacttatttattatttatatgatttattccaaacatgccttgattgttgctatgattgatctgatggttg |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
47379291 |
atactttgtttacgagaaaattgtgttcatgac----ttgttatttatatgatttattccaaacatgccttgattgttgctttgattgatctgatggttg |
47379386 |
T |
|
| Q |
299 |
accaatttgaattaaatacattcaaagtgagtttaaatt-------gaattgttggtagttta-tttttgacccg---------tctttccgctctttct |
381 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | || |||||| ||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
47379387 |
accaatttgaattaaatacattcaaactgagtttaaaattatctacgagttgttgttagtttattttttgacccgcctttcagcgctttctgctctttct |
47379486 |
T |
|
| Q |
382 |
tttattttgagtgtgattaaaattttgtattcctttacgcttgctgaaattttgccttacattttggaatttctaggtcacaattatattggaactgaga |
481 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
47379487 |
tttatttggagtgtggttaaatatttgtatttgtttacgtttgctgaaattttggcttacattttggaatttctaggtcacaattatatcggatctgagc |
47379586 |
T |
|
| Q |
482 |
acctgcttttggatcttcttcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggcgatgatccaacggatattcgcacccaggctagtat |
581 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |
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|
| T |
47379587 |
acctgcttttgggtcttcttcgagagggtgagggtgtggccgcacgtgttcttgaaaatttgggtgctgatccaactaatattcgcacccaggctagtat |
47379686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 45110799 - 45110951
Alignment:
| Q |
3 |
taaagtctatgggaattaacctgaaagactctcgcgtggaagtcgaaaagataattggaaggggtagtggttttgtcgctgttgagattccgtttactcc |
102 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | || |||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
45110799 |
taaagtctatgggaatcaaccttaaagatgcacgggtggaagtagagaagataattggaaggggtagtggatttgttgctgttgagattccgtttactcc |
45110898 |
T |
|
| Q |
103 |
acgtgccaagagagttttggaactctcattggaggaagctcgccaacttggta |
155 |
Q |
| |
|
||||| ||| | || |||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
45110899 |
tcgtgcaaagcgtgtattggaactttcactcgaggaagctcgccaacttggta |
45110951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 456 - 584
Target Start/End: Original strand, 45111783 - 45111911
Alignment:
| Q |
456 |
aggtcacaattatattggaactgagaacctgcttttggatcttcttcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggcgatgatcca |
555 |
Q |
| |
|
||||||||||||||||||| | ||| || ||||| | | |||||||||||||||||| || || |||||||||||||||||||| | |||| |||||| |
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|
| T |
45111783 |
aggtcacaattatattggatcggagcacttgcttctaggtcttcttcgagagggtgagggagtagcagcacgtgttcttgaaaacctaggcgctgatcct |
45111882 |
T |
|
| Q |
556 |
acggatattcgcacccaggctagtattat |
584 |
Q |
| |
|
|| |||||||||| |||||| ||||||| |
|
|
| T |
45111883 |
actaatattcgcacacaggctcgtattat |
45111911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 47371913 - 47371966
Alignment:
| Q |
104 |
cgtgccaagagagttttggaactctcattggaggaagctcgccaacttggtaaa |
157 |
Q |
| |
|
|||||||||||||||||| || | |||||| ||||||||| ||||||||||||| |
|
|
| T |
47371913 |
cgtgccaagagagttttgaaattttcattgaaggaagctcaccaacttggtaaa |
47371966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 34057093 - 34056513
Alignment:
| Q |
1 |
tctaaagtctatgggaattaacctgaaagactctcgcgtggaagtcgaaaagataattggaaggggtagtggttttgtcgctgttgagattccgtttact |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| | || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34057093 |
tctaaagtgtatgggaattaacttgaaagatgcgcgtgtggaagtagaaaagataattggaaggggtggtggttttgtcgctgttgagattccgtttact |
34056994 |
T |
|
| Q |
101 |
ccacgtgccaagagagttttggaactctcattggaggaagctcgccaacttggtaaacgatagcatacctttatatgtcgtttttcatatcaaatcaatt |
200 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |||| ||| || |||| |||| ||||||||||||||| |
|
|
| T |
34056993 |
tcttgtgtcaagagagttttgaaactctcattggaggaatctcgccaacttggtatacgataacatagcttcatgtgtcattttgcatatcaaatcaatt |
34056894 |
T |
|
| Q |
201 |
atactttgtttatgaaaattgtgttcatgacttatttattatttatatgatttattccaaacatgccttgattgttgctatgattgatctgatggttgac |
300 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||| ||||||||||| || |||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
34056893 |
atactttgtttaccaaaattgtgttcataac----ttattatttgtatgatttatttcatgcatgacttgattgttgctttgattgatacgatggttgag |
34056798 |
T |
|
| Q |
301 |
caatttgaattaaatacattcaaagtgagtttaaat-------tgaattgttggtagttta-tttttgacccgtctttccgctctttcttttattttgag |
392 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||| |||||||||| ||||| | |||||| | | |||| |||||||||||||| ||||| |
|
|
| T |
34056797 |
caatatgaattaaatacattcaaaatgagtctaaatttatctatgaattgttgttagttcattttttggcttgccttttcgctctttctttta--ttgag |
34056700 |
T |
|
| Q |
393 |
tgtgattaaaattttgtattc--------------ctttacgcttgctgaaattttgccttacattttggaatttctaggtcacaattatattggaactg |
478 |
Q |
| |
|
||| |||||| ||||||||| ||| ||||||||||||||| |||||||| |||||||||||| ||| |||||||| || ||| |
|
|
| T |
34056699 |
tgtagttaaaa-tttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatggaatttctagatcataattatatccgatctg |
34056601 |
T |
|
| Q |
479 |
agaacctgcttttggatcttcttcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggcgatgatccaacggatattcg |
566 |
Q |
| |
|
|| ||||| | |||| | ||||||| |||||||| ||||||||||||| |||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
34056600 |
agcacctgttattgggttttcttcgcgagggtgagggtgtggcagcacctgttcttgaaaatttgggtgctgatccaactaatattcg |
34056513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 40242187 - 40242513
Alignment:
| Q |
5 |
aagtctatgggaattaacctgaaagactctcgcgtggaagtcgaaaagataattggaaggggtagtggttttgtcgctgttgagattccgtttactccac |
104 |
Q |
| |
|
||||||||||| |||||||| ||||| | || || || || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40242187 |
aagtctatggggattaacctaaaagatgcacgtgtcgaggtagagaagataattggaaggggcagtggttttgtcgctgttgagattccgtttactccgc |
40242286 |
T |
|
| Q |
105 |
gtgccaagagagttttggaactctcattggaggaagctcgccaacttggtaaacgatagcatacctttat-atgtcgtttttcatatcaaatcaattata |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||| |||||| |||||||||| |
|
|
| T |
40242287 |
gtgccaagagagttttggaactctcattggaggaagctcgtcaacttggtaaacaatagcatacttttataatgtcgttttgcatatctaatcaattat- |
40242385 |
T |
|
| Q |
204 |
ctttgtttatgaaaattgtgttcatgacttatttattatttatatgatttattccaaacatgccttgattgttgctatgattgatctgatggttgaccaa |
303 |
Q |
| |
|
||||||| |||| |||||||| ||| ||||||||| |||||| ||||||||||||| ||||||| ||||| ||| ||||||| ||||| ||||| |
|
|
| T |
40242386 |
-cttgttta-caaaaatgtgttcacgac----ttattatttgtatgatatattccaaacatgacttgatttttgctttgagtgatctgttggttcaccaa |
40242479 |
T |
|
| Q |
304 |
tttgaattaaatacattcaaagtgagtttaaatt |
337 |
Q |
| |
|
|||||||||||| |||||||||| |||| ||||| |
|
|
| T |
40242480 |
tttgaattaaattcattcaaagtaagttgaaatt |
40242513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 420 - 584
Target Start/End: Original strand, 40242621 - 40242785
Alignment:
| Q |
420 |
gcttgctgaaattttgccttacattttggaatttctaggtcacaattatattggaactgagaacctgcttttggatcttcttcgagagggtgaaggtgtg |
519 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40242621 |
gcttgctgaaagtttggcttacattttggaatttctaggtcacaattatatcggatctgagcacttgcttttgggtcttcttcgagagggtgaaggtgtg |
40242720 |
T |
|
| Q |
520 |
gcagcacgtgttcttgaaaatttgggcgatgatccaacggatattcgcacccaggctagtattat |
584 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||| |||||||||||||||| |||||||| |
|
|
| T |
40242721 |
gcagcacgtgttcttgaaaatttgggtgccgacccaactaatattcgcacccaggcaagtattat |
40242785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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