View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13082_low_5 (Length: 418)
Name: NF13082_low_5
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 132 - 412
Target Start/End: Complemental strand, 45928708 - 45928428
Alignment:
| Q |
132 |
ttggggcagtgctgatgcataatatacagcatattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
231 |
Q |
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| T |
45928708 |
ttggggcggtgctgatgcataatagacagcctattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
45928609 |
T |
|
| Q |
232 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
331 |
Q |
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| T |
45928608 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
45928509 |
T |
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| Q |
332 |
gttgattcacattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcatattctt |
412 |
Q |
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| T |
45928508 |
gttgattctcattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcataatctt |
45928428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 45934323 - 45934199
Alignment:
| Q |
1 |
atatttcgagcctccatgcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcatgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45934323 |
atatttcgagcctccatgcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcatgata |
45934224 |
T |
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| Q |
101 |
atgaaatcacccaatgcagtccgaa |
125 |
Q |
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| T |
45934223 |
atgaaatcacccaaggcagtccgaa |
45934199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 15816557 - 15816433
Alignment:
| Q |
1 |
atatttcgagcctccatgcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcatgata |
100 |
Q |
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|||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
15816557 |
atatttagagcctccatgcaagagtgttcttccatagtaatgagctttcgttccaagctggaaagtaaagaacacagaggctaattgcagttgcatgata |
15816458 |
T |
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| Q |
101 |
atgaaatcacccaatgcagtccgaa |
125 |
Q |
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|||||||||||||| |||||||||| |
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| T |
15816457 |
atgaaatcacccaaggcagtccgaa |
15816433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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