View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13082_low_6 (Length: 358)
Name: NF13082_low_6
Description: NF13082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13082_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 44 - 343
Target Start/End: Original strand, 39693579 - 39693878
Alignment:
| Q |
44 |
aggtgtactttggtttggttatgtcaagcttacaactgatgttgatttgtgattgatcaactttacaagaagtttacaatgacaccacatacatgaacac |
143 |
Q |
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| T |
39693579 |
aggtgtactttggtttggttatgtcaagcttacaactgatgttgatttgtgattgatcaactttacaagaagtttacaatgacaccacatacatgaacac |
39693678 |
T |
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| Q |
144 |
ttgaaaatcatggttaattctctctaaatgcatggttgataaagttcatagaagattaatgagtggagaaattgcttttggtgttggagtccattgttgt |
243 |
Q |
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| T |
39693679 |
ttgaaaatcatggttaattctctctaaatgcatggttgataaagttcatagaagattaatgagtggagaaattgcttttggtgttggagtccattgttgt |
39693778 |
T |
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| Q |
244 |
gatgattttctttttgtttcaatagaaatgatgaagaatcaaggtcgtagattttagtcgcagatagtggagtgctactttttgatgtcagaccctaatg |
343 |
Q |
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| T |
39693779 |
gatgattttctttctgtttcaatagaaatgatgaagaatcaaggtcgtagattttagtcgcagatagtggagtgctactttttgatgtcaaaccctaatg |
39693878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 39693523 - 39693570
Alignment:
| Q |
10 |
attatactaataaaaaagcctagaacaaagcactaggtgtactttggt |
57 |
Q |
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| T |
39693523 |
attatactaataaaaaagcctagaacaaagcactaggtgtactttggt |
39693570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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