View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13083_high_1 (Length: 598)
Name: NF13083_high_1
Description: NF13083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13083_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 554
Target Start/End: Complemental strand, 36516512 - 36515977
Alignment:
| Q |
19 |
atcaaagggttcaaaagaaacattcaggatctaacctttcatcatacaaggtgtatatataatagatgaatactttgtccaataattgtcnnnnnnnctt |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36516512 |
atcaaagggttcaaaagaaacattcaggatctaccctttcatcatacaaggtgtatatataatagatgaatactttgtccaataattgtctttttttctt |
36516413 |
T |
|
| Q |
119 |
ctttcccacatacatgtgattttgattttgtgcacaacctagctatatgttaattaatgtttgattaatattttgttttgatgtttttgtacatgtagga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36516412 |
ctttcccacatacatgtgattttgattttgtgcacaacctagctatatgttaattaatgtttgattaatattttgttttgatgtttttgtacatgtagga |
36516313 |
T |
|
| Q |
219 |
ggatgagggaagatataattcaatggccaacaatggagaattgaatttagataacaaattgcctataagaagatcaatgcaaggagataaaaatttggag |
318 |
Q |
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| T |
36516312 |
ggatgagggaagatataattcaatggccaacaatggagaattgaatttagataacaaattgcctataagaagatcaatgcaaggagataaaaatttggag |
36516213 |
T |
|
| Q |
319 |
aaggttgaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttgagaaccaatgacaccgtagtgcctcttgaggactctcatgattatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36516212 |
aaggttgaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttgagaaccaatgacaccgtagtgcctcttgaggactctcatgattatg |
36516113 |
T |
|
| Q |
419 |
ttccacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatgaaatatatcacgagagataaggattttattactcatcaaaggtc |
518 |
Q |
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| T |
36516112 |
ttccacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatgaaatatatcacgagaaataaggattttattactcatcaaaggtc |
36516013 |
T |
|
| Q |
519 |
agattgagttagtgtcacttaggtaacatagcaaag |
554 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
36516012 |
agattgagttagtgccacttaggtaacatagcaaag |
36515977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 517
Target Start/End: Original strand, 36804721 - 36805217
Alignment:
| Q |
21 |
caaagggttcaaaagaaacattcaggatctaacctttcatcatacaaggtgtatatataatag-----atgaatactttgtccaataattgtcnnnnnnn |
115 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||| |
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| T |
36804721 |
caaaggattcaaaagaaacattcaggatctaccctttcatcatacaaggtgtatatataataatatgaacgaatattttgttcaataattgtc------- |
36804813 |
T |
|
| Q |
116 |
cttctttcccacatacatgtgattttgattttgtgcacaacctagctatatgttaattaatgtttgattaatattttgttttgatgtttttgtacatgta |
215 |
Q |
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| T |
36804814 |
-ttctt------atacatgtgattttgattttgtgcaca-cctagcta-atggtaattaatgtttgattaatactttgttttgttgtttttgtacatata |
36804904 |
T |
|
| Q |
216 |
ggaggatgagggaagatataattcaatggccaacaatggagaattgaatttagataacaaattgcctataagaagatcaatgcaaggagataaaaatttg |
315 |
Q |
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| T |
36804905 |
ggaggatgagggaagatataagccaatggcatacaatggagaattgaatttaggtaacaaattgcctataagaagatcaatgcaagaagatagaaatttg |
36805004 |
T |
|
| Q |
316 |
gagaaggttgaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttgagaaccaatgacaccgt------agtgcctcttgaggactctc |
409 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | | |||||||||||||||| |
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| T |
36805005 |
gagaaggtagaaggaagtcttgcaaaagcaagagcattgataaaacaagccttgttaagaacaaatgacaccgtactagcactacctcttgaggactctc |
36805104 |
T |
|
| Q |
410 |
atgattatgttccacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatgaaatata-----tcacgagagataaggattttatt |
504 |
Q |
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| T |
36805105 |
atgattttgttccacaaggagacatttacagaaatgcctttgcttttcataggtaagattttatgaactatatcaattcatgagagataaggattttatt |
36805204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 253 - 405
Target Start/End: Complemental strand, 36538601 - 36538450
Alignment:
| Q |
253 |
ggagaattgaatttagataacaaattgcctataagaagatcaatgcaaggagataaaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcat |
352 |
Q |
| |
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|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36538601 |
ggagaattgattttagttaacaaattgcccataagaagatcaatgcaaggagatagaaatttggagaaggttgaaggaagtcttgcaaaagcaagagcat |
36538502 |
T |
|
| Q |
353 |
tgataaaacaagccttgttgagaaccaatgacaccgtagtgcctcttgaggac |
405 |
Q |
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|||||||||||||||| |||||||||||||||| ||| | |||||||||||| |
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| T |
36538501 |
tgataaaacaagcctt-atgagaaccaatgacactgtactacctcttgaggac |
36538450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 394 - 524
Target Start/End: Complemental strand, 36520382 - 36520252
Alignment:
| Q |
394 |
cctcttgaggactctcatgattatgttccacaaggacacatctacagaaatgcctttgcttttcataggtaagattttatgaaatatatcacgagagata |
493 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| | |
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| T |
36520382 |
cctcttgaggactctcatgattatgttccacaaggagacatctacagaaatgcatttgcttttcataggtaagattttatgaactatatcatgagagaga |
36520283 |
T |
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| Q |
494 |
aggattttattactcatcaaaggtcagattg |
524 |
Q |
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| T |
36520282 |
aggattttattactcatcaaagatcggattg |
36520252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 36538777 - 36538617
Alignment:
| Q |
55 |
tttcatcatacaaggtgtatatataatagatgaatactttgtccaataattgtcnnnnnnncttctttcccacatacatgtgattttgatttt-gtgcac |
153 |
Q |
| |
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||||||||||||||||||||||| || |||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||| || ||| |
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| T |
36538777 |
tttcatcatacaaggtgtatataacatgaatgaatacgttgtccaataattttcttctt--cttttttcccacatacatgtgattttgatttttgtacac |
36538680 |
T |
|
| Q |
154 |
aacctagctatatgttaattaatgtttgattaatattttgttttgatgtttttgtacatgtag |
216 |
Q |
| |
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|||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36538679 |
aacctagctagagattaattaatgtttgattaatattttgttttgttgtttttgtacatgtag |
36538617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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