View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13083_high_4 (Length: 423)

Name: NF13083_high_4
Description: NF13083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13083_high_4
NF13083_high_4
[»] chr5 (18 HSPs)
chr5 (4-407)||(10859581-10859984)
chr5 (276-395)||(38822279-38822398)
chr5 (321-405)||(39097188-39097271)
chr5 (312-351)||(7667605-7667644)
chr5 (308-406)||(7328686-7328784)
chr5 (192-246)||(6988213-6988267)
chr5 (185-242)||(42724575-42724632)
chr5 (308-352)||(10860401-10860445)
chr5 (312-368)||(17862484-17862540)
chr5 (312-395)||(1102085-1102168)
chr5 (312-351)||(42439668-42439707)
chr5 (313-351)||(33608499-33608537)
chr5 (308-349)||(13224665-13224706)
chr5 (313-346)||(36927734-36927767)
chr5 (312-353)||(36927889-36927930)
chr5 (312-353)||(38592206-38592247)
chr5 (309-350)||(38845342-38845383)
chr5 (308-352)||(10373470-10373514)
[»] chr2 (16 HSPs)
chr2 (276-349)||(5977178-5977252)
chr2 (192-348)||(6767673-6767822)
chr2 (276-347)||(11510953-11511023)
chr2 (312-351)||(44439249-44439288)
chr2 (313-379)||(6925657-6925723)
chr2 (276-352)||(38129481-38129556)
chr2 (140-248)||(1763264-1763373)
chr2 (276-346)||(16519448-16519514)
chr2 (312-353)||(21234576-21234616)
chr2 (322-351)||(33502909-33502938)
chr2 (312-349)||(37402284-37402321)
chr2 (312-353)||(44810368-44810409)
chr2 (196-248)||(4894099-4894151)
chr2 (277-353)||(5063991-5064067)
chr2 (192-248)||(15220799-15220855)
chr2 (276-352)||(44147966-44148042)
[»] chr1 (11 HSPs)
chr1 (314-381)||(1416273-1416339)
chr1 (276-347)||(7302558-7302629)
chr1 (293-349)||(41516985-41517041)
chr1 (279-386)||(18325126-18325233)
chr1 (312-351)||(45661543-45661582)
chr1 (277-347)||(36413755-36413825)
chr1 (276-349)||(23700467-23700540)
chr1 (312-349)||(32088624-32088661)
chr1 (342-407)||(41516909-41516974)
chr1 (312-352)||(12655239-12655279)
chr1 (313-345)||(34570977-34571009)
[»] chr8 (4 HSPs)
chr8 (276-349)||(3278967-3279040)
chr8 (298-351)||(9051086-9051139)
chr8 (321-389)||(18355908-18355975)
chr8 (312-340)||(37499049-37499077)
[»] chr7 (5 HSPs)
chr7 (308-352)||(45369157-45369201)
chr7 (146-248)||(40491669-40491772)
chr7 (308-351)||(21436045-21436089)
chr7 (312-362)||(33504504-33504554)
chr7 (162-242)||(21435907-21435986)
[»] chr4 (11 HSPs)
chr4 (293-349)||(51093256-51093311)
chr4 (312-363)||(2206769-2206820)
chr4 (313-368)||(46012662-46012717)
chr4 (276-378)||(28178860-28178962)
chr4 (280-349)||(37561435-37561504)
chr4 (192-247)||(7263547-7263602)
chr4 (312-351)||(11271588-11271627)
chr4 (192-242)||(46507975-46508025)
chr4 (312-345)||(8330117-8330150)
chr4 (313-353)||(29779106-29779145)
chr4 (321-393)||(42152958-42153030)
[»] chr3 (9 HSPs)
chr3 (274-406)||(21513359-21513491)
chr3 (144-242)||(27825268-27825367)
chr3 (308-350)||(49634086-49634128)
chr3 (310-387)||(35950990-35951067)
chr3 (340-407)||(3845208-3845275)
chr3 (280-351)||(4194008-4194078)
chr3 (312-353)||(41115413-41115453)
chr3 (311-408)||(51667073-51667170)
chr3 (276-344)||(48089704-48089772)
[»] scaffold0283 (1 HSPs)
scaffold0283 (185-242)||(18549-18606)
[»] chr6 (6 HSPs)
chr6 (308-351)||(6214812-6214855)
chr6 (312-351)||(6544549-6544588)
chr6 (192-242)||(765323-765373)
chr6 (365-407)||(31812231-31812273)
chr6 (278-347)||(29240468-29240537)
chr6 (145-248)||(19260773-19260877)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 4 - 407
Target Start/End: Original strand, 10859581 - 10859984
Alignment:
Q  4 aaagttcaatcatgtttacaaacagaatctacattatgacgtaaacaaacatttctacaaagattaacacaatctacacttcctgtttaaggatttcaaa 103  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  10859581 aaagttcaatcatgtttacaaacagaatctacattataatgtaaacaaacatttctacaacgattaacacaatctacacttcctgtttaaggatttcaca 10859680  T
Q  104 ccaacaccataagttcaatcatgaaggacaagccttagcgtgtgtttggttctgcggtacaaaaattgatattgaatatatttattcagtaaaattgatt 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10859681 ccaacaccataagctcaatcatgaaggacaagccttagcgtgtgtttggttctgcggtacaaaaattgatattgaatatatttattcagtaaaattgatt 10859780  T
Q  204 ataactaaaagtaagttgaatacaaagtgatttatgtttagatacgtcatacgttcatgtaagaaagggtcaaacaataaatttgaggttaaaaatcaaa 303  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10859781 ataactaaaagtaagttgaatgcaaagtgatttatgtttagatacgtcatacgttcatgtaagaaagggtcaaacaataaatttgaggttaaaaatcaaa 10859880  T
Q  304 tggtgaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctctataatgaat 403  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10859881 tgttgaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctctataatgaat 10859980  T
Q  404 tttg 407  Q
    ||||    
T  10859981 tttg 10859984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 395
Target Start/End: Original strand, 38822279 - 38822398
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtca 375  Q
    ||||||||||||||||||||||||||| ||   ||| |||| ||||||||||||| |||||| ||||||||||||||  || ||||||||| | | || |    
T  38822279 aacaataaatttgaggttaaaaatcaattgtaaaggtaaaaactccaaattctagattcaagctagaatcaattctaatcgggaacattcatatacgtta 38822378  T
Q  376 aaatcatttctacacctcta 395  Q
    |||||| |||| || |||||    
T  38822379 aaatcaattcttcatctcta 38822398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 39097271 - 39097188
Alignment:
Q  321 caaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctctataatgaattt 405  Q
    |||||| ||||||||||| ||||||||||||||| || | ||  |||||| |||||||||| ||||||||||||||||| |||||    
T  39097271 caaattttagcttcaagt-agaatcaattctacctgaaaccaaccaaacatgtcaaaatcaattctacacctctataatcaattt 39097188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 7667644 - 7667605
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7667644 caaaagctccaaattctagcttcaagttagaatcaattct 7667605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 406
Target Start/End: Original strand, 7328686 - 7328784
Alignment:
Q  308 gaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctctataatgaatttt 406  Q
    |||||||||| | ||||||||||||||||||||||||||||||||   || ||||| || ||| || ||||||| || |||||||| | ||| ||||||    
T  7328686 gaggcaaaagtttcaaattctagcttcaagttagaatcaattctatttgaaaacatccagacatgtaaaaatcaattatacacctcaaaaatcaatttt 7328784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 6988267 - 6988213
Alignment:
Q  192 gtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgtttagat 246  Q
    |||||||||||| ||| ||||||||||||||||  ||| ||||||||||||||||    
T  6988267 gtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 6988213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 42724632 - 42724575
Alignment:
Q  185 ttattcagtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgttt 242  Q
    |||||| |||||||||||| |||| |||||||||||||| | ||||| ||||||||||    
T  42724632 ttattctgtaaaattgattctaacaaaaagtaagttgaagataaagtcatttatgttt 42724575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 10860401 - 10860445
Alignment:
Q  308 gaggcaaaagctccaaattctagcttcaagttagaatcaattcta 352  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||    
T  10860401 gaggcaaaagctacaaattctagcttcaagtcagaatcacttcta 10860445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 17862540 - 17862484
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaa 368  Q
    |||||||| || ||| ||||||||||||| ||||||||||||  |||||||||||||    
T  17862540 caaaagctacatattatagcttcaagttaaaatcaattctacttgagaacattcaaa 17862484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 395
Target Start/End: Complemental strand, 1102168 - 1102085
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctcta 395  Q
    |||||||| ||||| |||||||||||||| ||||||||||||   ||||||   ||||| |||||||||| || ||| ||||||    
T  1102168 caaaagctacaaatcctagcttcaagttaaaatcaattctacttcagaacacctaaacacgtcaaaatcaattatacccctcta 1102085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 42439668 - 42439707
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  42439668 caaaagctacagattctagcttcaagttagaatcaattct 42439707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 33608537 - 33608499
Alignment:
Q  313 aaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  33608537 aaaaactccaacttctagcttcaagttagaatcaattct 33608499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 13224665 - 13224706
Alignment:
Q  308 gaggcaaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    |||| ||||||||||||||||||||||||||| |||| ||||    
T  13224665 gaggtaaaagctccaaattctagcttcaagtttgaatgaatt 13224706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 36927767 - 36927734
Alignment:
Q  313 aaaagctccaaattctagcttcaagttagaatca 346  Q
    |||||||| |||||||||||||||||||||||||    
T  36927767 aaaagctctaaattctagcttcaagttagaatca 36927734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 36927930 - 36927889
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctac 353  Q
    |||||||||||||||||||||||||  || ||||||||||||    
T  36927930 caaaagctccaaattctagcttcaatatataatcaattctac 36927889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 38592247 - 38592206
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctac 353  Q
    |||||||| |||||||| ||||||| ||||||||||||||||    
T  38592247 caaaagctacaaattctggcttcaaattagaatcaattctac 38592206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 38845383 - 38845342
Alignment:
Q  309 aggcaaaagctccaaattctagcttcaagttagaatcaattc 350  Q
    ||||||||||| |||||||||| ||||||||| |||||||||    
T  38845383 aggcaaaagctacaaattctagattcaagttaaaatcaattc 38845342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 10373514 - 10373470
Alignment:
Q  308 gaggcaaaagctccaaattctagcttcaagttagaatcaattcta 352  Q
    |||||||||||| ||||| ||| |||||||||| |||||||||||    
T  10373514 gaggcaaaagctacaaatcctaacttcaagttataatcaattcta 10373470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 5977252 - 5977178
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaa-gctccaaattctagcttcaagttagaatcaatt 349  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||||||| ||||||||||||||||||||||    
T  5977252 aacaataaatttgaggttaaaaatcaaatatagaggcaaaaagctccaaattttagcttcaagttagaatcaatt 5977178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 348
Target Start/End: Complemental strand, 6767822 - 6767673
Alignment:
Q  192 gtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgtttagatacgtcatacgttcatgtaagaaagggtcaaacaataaatttgagg 291  Q
    |||||||||||| | | ||||| | ||||||||  ||||||||||| ||||| |||| ||       ||||||||| ||||| |||||| |||||||| |    
T  6767822 gtaaaattgattgtgattaaaaatgagttgaatgtaaagtgatttacgtttatatacatc-------catgtaagagagggttaaacaacaaatttgaag 6767730  T
Q  292 ttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaat 348  Q
     ||||| |||| ||  || ||||||||||||||||||||||||||||||||||||||    
T  6767729 ctaaaattcaattgtagaagcaaaagctccaaattctagcttcaagttagaatcaat 6767673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 11511023 - 11510953
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaa 347  Q
    |||||||||||||||||||||| | || ||  ||||||||| |||||||||||||||||||| |||||||||    
T  11511023 aacaataaatttgaggttaaaa-taaattgtagaggcaaaaactccaaattctagcttcaagatagaatcaa 11510953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 44439288 - 44439249
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  44439288 caaaagctccaaattttagcttcaagttagaatcaattct 44439249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 6925723 - 6925657
Alignment:
Q  313 aaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaat 379  Q
    |||| |||||||||||| |||||||| |||||||||||||| | |||| || |||||| ||||||||    
T  6925723 aaaatctccaaattctaacttcaagtaagaatcaattctactcaagaatatacaaacatgtcaaaat 6925657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 38129481 - 38129556
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattcta 352  Q
    |||||||||||||||| |||||||||| ||    ||||||||||| ||||| ||||||  |||||||||||||||||    
T  38129481 aacaataaatttgaggctaaaaatcaattgcat-ggcaaaagctcgaaattgtagctttgagttagaatcaattcta 38129556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 1763373 - 1763264
Alignment:
Q  140 agcgtgtgtttggttctgcggt-acaaaaattgatattgaatatatttattcagtaaaattgattataactaaaagtaagttgaatacaaagtgatttat 238  Q
    ||||||||||||||| |||||| || | ||||||| ||||  | ||| |||  |||||||||||| |   ||||| | ||||||||  ||||||||||||    
T  1763373 agcgtgtgtttggttgtgcggtgacgagaattgattttgataaaattgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttat 1763274  T
Q  239 gtttagatac 248  Q
    ||||||||||    
T  1763273 gtttagatac 1763264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 16519514 - 16519448
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatca 346  Q
    |||||||||||||||| |||| |||| |    |||||||||||||||| |||||||||| ||| |||||||    
T  16519514 aacaataaatttgaggctaaagatcata----gaggcaaaagctccaacttctagcttccagtgagaatca 16519448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 21234576 - 21234616
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctac 353  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  21234576 caaaagctacaaattctagcttcaag-tagaatcaattctac 21234616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 351
Target Start/End: Original strand, 33502909 - 33502938
Alignment:
Q  322 aaattctagcttcaagttagaatcaattct 351  Q
    ||||||||||||||||||||||||||||||    
T  33502909 aaattctagcttcaagttagaatcaattct 33502938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 37402284 - 37402321
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  37402284 caaaagctacaaattctagcttcaagttagagtcaatt 37402321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 44810409 - 44810368
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctac 353  Q
    |||||||| ||||| ||||||||||||||||||||| |||||    
T  44810409 caaaagctacaaatcctagcttcaagttagaatcaactctac 44810368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 4894099 - 4894151
Alignment:
Q  196 aattgattataactaaaagtaagttgaatacaaagtgatttatgtttagatac 248  Q
    |||||||| || |||||| |||||||||   ||||||||||||||||||||||    
T  4894099 aattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagatac 4894151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 5063991 - 5064067
Alignment:
Q  277 acaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattctac 353  Q
    |||||||||| |||  | |||||||| ||  ||| | ||| |||||| ||||||||||| |||||||||||||||||    
T  5063991 acaataaattcgagagtgaaaatcaattgtagagactaaaactccaatttctagcttcatgttagaatcaattctac 5064067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 15220799 - 15220855
Alignment:
Q  192 gtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgtttagatac 248  Q
    |||| ||||||||| || |||||| ||||||||  |||||||||||||||| |||||    
T  15220799 gtaatattgattatgacgaaaagtgagttgaatgtaaagtgatttatgtttggatac 15220855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 44147966 - 44148042
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattcta 352  Q
    ||||||||||||||   |||||||||| ||  |||  |||||||| ||| |||| |||||||||| |||||||||||    
T  44147966 aacaataaatttgaaagtaaaaatcaattgcggagataaaagctctaaactctaacttcaagttataatcaattcta 44148042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 1416273 - 1416339
Alignment:
Q  314 aaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatca 381  Q
    ||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||| ||||||||||    
T  1416273 aaagctccaaattttggctt-aagttagaatcaattctacccaaaaacattcaaacatgtcaaaatca 1416339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 7302558 - 7302629
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaa 347  Q
    |||||| ||||||||||||||| |||| |  ||||||||||||| ||| |||||||||||||||| ||||||    
T  7302558 aacaattaatttgaggttaaaagtcaactattgaggcaaaagcttcaacttctagcttcaagttataatcaa 7302629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 41517041 - 41516985
Alignment:
Q  293 taaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    |||||||||| ||  ||||||||| |||||||||||| |||||||||||||||||||    
T  41517041 taaaaatcaattgaagaggcaaaaactccaaattctaacttcaagttagaatcaatt 41516985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 18325126 - 18325233
Alignment:
Q  279 aataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaa 378  Q
    ||||||| ||||| |||||||||| ||  ||  ||||| |||| ||||||   ||||||||| |||||||||||| |||||| || |||||| |||||||    
T  18325126 aataaatctgaggataaaaatcaattgtagaaacaaaaactcctaattctgatttcaagttaaaatcaattctactcgagaaaatccaaacatgtcaaaa 18325225  T
Q  379 tcatttct 386  Q
    ||| ||||    
T  18325226 tcaattct 18325233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 45661582 - 45661543
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  45661582 caaaagctccaaattttaacttcaagttagaatcaattct 45661543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 36413825 - 36413755
Alignment:
Q  277 acaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaa 347  Q
    |||| |||||||||| ||||||||||  |  ||| ||||| || ||||||||| |||||||||||||||||    
T  36413825 acaacaaatttgaggctaaaaatcaatcgtagagccaaaaacttcaaattctaacttcaagttagaatcaa 36413755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 23700540 - 23700467
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    |||||||||||||||  ||||||||||  |   |||||||| |||||||||| |||||||||||| || |||||    
T  23700540 aacaataaatttgagactaaaaatcaatggcaaaggcaaaaactccaaattcgagcttcaagttataaccaatt 23700467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 32088624 - 32088661
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  32088624 caaaagctcgaaatcctagcttcaagttagaatcaatt 32088661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 41516974 - 41516909
Alignment:
Q  342 aatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctctataatgaattttg 407  Q
    |||||||||||| ||| ||||||| || | |||| ||||| ||||||||||||| |||| ||||||    
T  41516974 aatcaattctactcgaaaacattccaagatgtcataatcaattctacacctctagaatggattttg 41516909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 12655279 - 12655239
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattcta 352  Q
    |||| ||| |||||||||||||||||||||||| |||||||    
T  12655279 caaatgctacaaattctagcttcaagttagaattaattcta 12655239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 34570977 - 34571009
Alignment:
Q  313 aaaagctccaaattctagcttcaagttagaatc 345  Q
    |||||||||||||| ||||||||||||||||||    
T  34570977 aaaagctccaaattatagcttcaagttagaatc 34571009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 3279040 - 3278967
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    |||| ||||||||||||||||| | || || ||||||| ||||| |||||||||| |||||||||||| |||||    
T  3279040 aacattaaatttgaggttaaaagttaactgttgaggcagaagcttcaaattctagattcaagttagaaccaatt 3278967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 9051139 - 9051086
Alignment:
Q  298 atcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    ||||| || |||||||||| ||||||||||||| |||||||||||| |||||||    
T  9051139 atcaattgttgaggcaaaaactccaaattctagtttcaagttagaaccaattct 9051086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 18355908 - 18355975
Alignment:
Q  321 caaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctaca 389  Q
    ||||| |||||||||| | |||||||||||||| ||| |||| ||| ||| |||||||||| |||||||    
T  18355908 caaatcctagcttcaa-tcagaatcaattctactcgaaaacaatcatacatgtcaaaatcaattctaca 18355975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Original strand, 37499049 - 37499077
Alignment:
Q  312 caaaagctccaaattctagcttcaagtta 340  Q
    |||||||||||||||||||||||||||||    
T  37499049 caaaagctccaaattctagcttcaagtta 37499077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 45369201 - 45369157
Alignment:
Q  308 gaggcaaaagctccaaattctagcttcaagttagaatcaattcta 352  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  45369201 gaggcaaaagctccgaattctagcttcaagttaaaatcaattcta 45369157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 40491772 - 40491669
Alignment:
Q  146 tgtttggttctgcggt-acaaaaattgatattgaatatatttattcagtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgtttag 244  Q
    |||||||||||||||| |||| ||||||| |||| |  ||| |||| |||||||||||| | ||||||||| |||||||   |||||||||||| ||| |    
T  40491772 tgtttggttctgcggtgacaagaattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttgg 40491673  T
Q  245 atac 248  Q
    ||||    
T  40491672 atac 40491669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 21436045 - 21436089
Alignment:
Q  308 gaggcaaaagctccaaa-ttctagcttcaagttagaatcaattct 351  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  21436045 gaggcaaaagctccaaaattctagcttcaagttaaaatcaattct 21436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 33504504 - 33504554
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctacccgagaaca 362  Q
    |||||||| ||||||||||||| |||||| ||||| |||||| ||||||||    
T  33504504 caaaagctacaaattctagctttaagttataatcacttctactcgagaaca 33504554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 21435907 - 21435986
Alignment:
Q  162 acaaaaattgatattgaatatatttattcagtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgttt 242  Q
    ||||| |||||| || |||| ||| ||||| |||| |||||||| ||||| | | |||||||| |||||||||||||||||    
T  21435907 acaaagattgattttaaataaattgattcaataaa-ttgattatgactaacattgagttgaatgcaaagtgatttatgttt 21435986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 51093311 - 51093256
Alignment:
Q  293 taaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    |||||||||| ||  ||||||||||||||||||||||||||| ||||||||||||||    
T  51093311 taaaaatcaattgtagaggcaaaagctccaaattctagcttc-agttagaatcaatt 51093256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 2206769 - 2206820
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctacccgagaacat 363  Q
    |||||||||||| || ||||| |||||||||||||||||||| |||||||||    
T  2206769 caaaagctccaatttttagctgcaagttagaatcaattctactcgagaacat 2206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 46012662 - 46012717
Alignment:
Q  313 aaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaa 368  Q
    |||||||  ||||||||||||||||||||||||||||||||  ||||| |||||||    
T  46012662 aaaagctgtaaattctagcttcaagttagaatcaattctacttgagaatattcaaa 46012717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 28178860 - 28178962
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtca 375  Q
    |||||||||||| ||| ||||| |||| ||  | ||| ||| |||||||| |||| ||||| |||||||||||| |||  || |||||||||||| ||||    
T  28178860 aacaataaatttaaggctaaaattcaattgtagtggcgaaaactccaaatactagattcaaattagaatcaattttacttgaaaacattcaaacatgtca 28178959  T
Q  376 aaa 378  Q
    |||    
T  28178960 aaa 28178962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 37561504 - 37561435
Alignment:
Q  280 ataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaatt 349  Q
    |||||||||||||||||| |||| ||  |||||||||||| |||||||||  ||||||| ||||| ||||    
T  37561504 ataaatttgaggttaaaattcaattgtagaggcaaaagcttcaaattctaatttcaagtcagaatgaatt 37561435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 7263547 - 7263602
Alignment:
Q  192 gtaaaattgattataactaaaagt-aagttgaatacaaagtgatttatgtttagata 247  Q
    |||||||||||||||||||||||| || ||||| || ||||||||||||||||||||    
T  7263547 gtaaaattgattataactaaaagtgaatttgaagac-aagtgatttatgtttagata 7263602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 11271588 - 11271627
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  11271588 caaaagctacaaatcctagcttcaagttagaatcaattct 11271627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 46507975 - 46508025
Alignment:
Q  192 gtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgttt 242  Q
    |||||||||||| ||| ||||||| ||| ||||| ||||||||||||||||    
T  46507975 gtaaaattgattctaaataaaagtgagtggaatataaagtgatttatgttt 46508025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Complemental strand, 8330150 - 8330117
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatc 345  Q
    |||||||||||| |||||||||||||||||||||    
T  8330150 caaaagctccaatttctagcttcaagttagaatc 8330117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 29779106 - 29779145
Alignment:
Q  313 aaaagctccaaattctagcttcaagttagaatcaattctac 353  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  29779106 aaaagctacaaattctagcttcaag-tagaatcaattctac 29779145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 42152958 - 42153030
Alignment:
Q  321 caaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctc 393  Q
    ||||| ||| |||||| || ||||||||||||| | ||| || ||||||| |||||||| | |||||||||||    
T  42152958 caaatcctaacttcaaattggaatcaattctactcaagagcaatcaaacatgtcaaaataaattctacacctc 42153030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 406
Target Start/End: Original strand, 21513359 - 21513491
Alignment:
Q  274 caaacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggt 373  Q
    |||| ||||||||||||  |||||||||  |   ||| |||||||| ||||| ||||||  |||||| ||||||||||||  |||||||| ||| || ||    
T  21513359 caaaaaataaatttgagtgtaaaaatcacgtttggagtcaaaagctacaaatcctagctctaagttaaaatcaattctacttgagaacatccaagcatgt 21513458  T
Q  374 caaaatcatttctacacctctataatgaatttt 406  Q
     ||||||| |||| |||||||| ||| ||||||    
T  21513459 taaaatcaattctccacctctagaatcaatttt 21513491  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 27825268 - 27825367
Alignment:
Q  144 tgtgtttggttctgcggta-caaaaattgatattgaatatatttattcagtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgttt 242  Q
    ||||||||||| ||||||| || |||||||| ||||||  |||||||   ||||||||||||| ||||||||| ||||||||| ||| | || |||||||    
T  27825268 tgtgtttggttatgcggtaacacaaattgattttgaatgaatttattttataaaattgattatgactaaaagttagttgaatataaaataatatatgttt 27825367  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 49634086 - 49634128
Alignment:
Q  308 gaggcaaaagctccaaattctagcttcaagttagaatcaattc 350  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  49634086 gaggcaaaagctacaaatcctagcttcaagttagaatcaattc 49634128  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 387
Target Start/End: Complemental strand, 35951067 - 35950990
Alignment:
Q  310 ggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttcta 387  Q
    ||||||||| | ||||||||| ||||| |||||||||||||||| ||||||||  |||||  |||||| ||| |||||    
T  35951067 ggcaaaagcgcaaaattctagtttcaaattagaatcaattctactcgagaacaaccaaacctgtcaaactcaattcta 35950990  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 407
Target Start/End: Original strand, 3845208 - 3845275
Alignment:
Q  340 agaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctctataatgaattttg 407  Q
    ||||||||||||||  |||| ||  |||||| |||||||||| ||||||||||||| ||| |||||||    
T  3845208 agaatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacacctctagaatcaattttg 3845275  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 4194008 - 4194078
Alignment:
Q  280 ataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    ||||||| |||| |||||||||| ||  ||||||||  || ||||||||||||| |||||||||||||||||    
T  4194008 ataaattagaggctaaaaatcaattgtagaggcaaacacttcaaattctagctt-aagttagaatcaattct 4194078  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 41115413 - 41115453
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattctac 353  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  41115413 caaaagctacaaattctagcttcaag-tagaatcaattctac 41115453  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 408
Target Start/End: Complemental strand, 51667170 - 51667073
Alignment:
Q  311 gcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttctacacctctataatgaattttgt 408  Q
    |||||| ||||||||||| |||||| |||| |||||||| |||  |||| |||  ||||| |||||||||| || |||| || || ||| ||||||||    
T  51667170 gcaaaaactccaaattctggcttcatgttataatcaattatacttgagagcatcaaaacatgtcaaaatcagttgtacatctttaaaatcaattttgt 51667073  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 48089704 - 48089772
Alignment:
Q  276 aacaataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaat 344  Q
    |||||||| ||||||| |||||||||  ||  |||||||||||| ||| ||||| |||||| |||||||    
T  48089704 aacaataactttgaggctaaaaatcatttgtagaggcaaaagcttcaagttctaacttcaaattagaat 48089772  T

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Target: scaffold0283 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 18606 - 18549
Alignment:
Q  185 ttattcagtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgttt 242  Q
    |||||| |||||||||||| |||| |||||||||||||| | ||||| ||||||||||    
T  18606 ttattctgtaaaattgattctaacaaaaagtaagttgaagataaagtcatttatgttt 18549  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 6214812 - 6214855
Alignment:
Q  308 gaggcaaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    |||||||||| |||||| |||||||||||||||||||| |||||    
T  6214812 gaggcaaaagttccaaactctagcttcaagttagaatcgattct 6214855  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 6544549 - 6544588
Alignment:
Q  312 caaaagctccaaattctagcttcaagttagaatcaattct 351  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  6544549 caaaagctccgagttctagcttcaagttagaatcaattct 6544588  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 765323 - 765373
Alignment:
Q  192 gtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgttt 242  Q
    |||||||||||| |||||||||||||||||||   |||||||||| |||||    
T  765323 gtaaaattgattctaactaaaagtaagttgaaagtaaagtgatttgtgttt 765373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 31812273 - 31812231
Alignment:
Q  365 caaacaggtcaaaatcatttctacacctctataatgaattttg 407  Q
    |||||| |||||||||| ||||| |||||||||||||||||||    
T  31812273 caaacatgtcaaaatcaattctagacctctataatgaattttg 31812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 29240468 - 29240537
Alignment:
Q  278 caataaatttgaggttaaaaatcaaatggtgaggcaaaagctccaaattctagcttcaagttagaatcaa 347  Q
    ||||||||| |||| ||||| |||| ||  | ||||||| || |||||| ||||||||||||||||||||    
T  29240468 caataaattcgaggctaaaattcaattgtaggggcaaaaacttcaaattttagcttcaagttagaatcaa 29240537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 19260773 - 19260877
Alignment:
Q  145 gtgtttggttctgcggt-acaaaaattgatattgaatatatttattcagtaaaattgattataactaaaagtaagttgaatacaaagtgatttatgttta 243  Q
    |||||||||| |||||| ||||||| |||| ||||||   ||  ||| |||||||||||| |  |||||| | ||||||||| |||| ||||||||||||    
T  19260773 gtgtttggttgtgcggtgacaaaaaatgattttgaatgatttggttctgtaaaattgattctggctaaaattgagttgaatataaagggatttatgttta 19260872  T
Q  244 gatac 248  Q
     ||||    
T  19260873 aatac 19260877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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