View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13083_high_6 (Length: 382)

Name: NF13083_high_6
Description: NF13083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13083_high_6
NF13083_high_6
[»] chr4 (36 HSPs)
chr4 (203-366)||(4645922-4646092)
chr4 (12-114)||(4645668-4645770)
chr4 (16-114)||(6218234-6218332)
chr4 (16-114)||(22231264-22231362)
chr4 (308-359)||(4884283-4884334)
chr4 (16-114)||(21646457-21646555)
chr4 (16-102)||(40717409-40717495)
chr4 (30-114)||(7926372-7926456)
chr4 (16-100)||(22445482-22445566)
chr4 (16-107)||(17111593-17111684)
chr4 (16-102)||(35485257-35485343)
chr4 (224-296)||(20232036-20232108)
chr4 (16-114)||(35788689-35788788)
chr4 (31-113)||(4905693-4905775)
chr4 (16-114)||(32002353-32002450)
chr4 (16-98)||(50543539-50543621)
chr4 (12-86)||(52559593-52559667)
chr4 (220-297)||(2326258-2326335)
chr4 (67-112)||(21041432-21041477)
chr4 (61-114)||(28245717-28245770)
chr4 (18-114)||(40716576-40716673)
chr4 (62-114)||(30530118-30530170)
chr4 (30-102)||(34357998-34358070)
chr4 (16-84)||(35609697-35609765)
chr4 (32-114)||(4464341-4464424)
chr4 (30-73)||(5398178-5398221)
chr4 (12-87)||(14783170-14783245)
chr4 (31-114)||(35819084-35819167)
chr4 (220-267)||(53713480-53713526)
chr4 (16-90)||(1215779-1215853)
chr4 (31-101)||(35796946-35797016)
chr4 (16-73)||(5398473-5398530)
chr4 (23-102)||(13637426-13637506)
chr4 (219-275)||(16552074-16552130)
chr4 (220-296)||(34795734-34795810)
chr4 (31-99)||(43743034-43743102)
[»] chr5 (24 HSPs)
chr5 (16-114)||(25258257-25258355)
chr5 (16-114)||(25322047-25322145)
chr5 (25-114)||(32908908-32908997)
chr5 (16-114)||(24346692-24346791)
chr5 (16-114)||(15480352-15480450)
chr5 (16-101)||(24528570-24528655)
chr5 (31-114)||(6919385-6919468)
chr5 (16-114)||(24270061-24270159)
chr5 (23-101)||(2063703-2063781)
chr5 (16-114)||(9368625-9368723)
chr5 (37-102)||(17150436-17150501)
chr5 (16-114)||(41666948-41667047)
chr5 (16-114)||(18333655-18333753)
chr5 (61-114)||(95457-95510)
chr5 (16-100)||(20225071-20225155)
chr5 (68-115)||(30770225-30770272)
chr5 (32-114)||(24531645-24531727)
chr5 (16-77)||(2986005-2986066)
chr5 (33-114)||(43117694-43117775)
chr5 (30-114)||(6413613-6413697)
chr5 (30-85)||(8081098-8081153)
chr5 (227-276)||(38265061-38265110)
chr5 (30-74)||(33337451-33337495)
chr5 (12-72)||(36040474-36040534)
[»] scaffold0048 (1 HSPs)
scaffold0048 (16-101)||(81872-81957)
[»] chr8 (23 HSPs)
chr8 (12-114)||(24532377-24532479)
chr8 (16-99)||(39052900-39052983)
chr8 (16-102)||(8084157-8084243)
chr8 (16-102)||(11232162-11232248)
chr8 (16-102)||(11232397-11232483)
chr8 (17-114)||(12688103-12688200)
chr8 (32-100)||(10615440-10615508)
chr8 (31-114)||(3157515-3157598)
chr8 (31-114)||(20301306-20301389)
chr8 (31-114)||(21087938-21088021)
chr8 (31-101)||(5932153-5932223)
chr8 (16-114)||(31197645-31197742)
chr8 (32-101)||(10614908-10614977)
chr8 (66-114)||(18004285-18004333)
chr8 (30-114)||(41790703-41790786)
chr8 (23-105)||(27439512-27439594)
chr8 (16-102)||(37868551-37868637)
chr8 (31-100)||(36917409-36917478)
chr8 (16-87)||(17469848-17469919)
chr8 (16-102)||(20094763-20094848)
chr8 (30-104)||(34842722-34842796)
chr8 (19-99)||(10615663-10615744)
chr8 (224-296)||(36779467-36779539)
[»] chr7 (34 HSPs)
chr7 (16-114)||(4506962-4507060)
chr7 (16-114)||(25620166-25620264)
chr7 (16-102)||(29469635-29469721)
chr7 (23-114)||(18826444-18826535)
chr7 (23-114)||(28080701-28080792)
chr7 (16-102)||(21861324-21861410)
chr7 (32-114)||(33834237-33834319)
chr7 (16-102)||(36277194-36277280)
chr7 (32-102)||(36993276-36993346)
chr7 (12-79)||(23796175-23796242)
chr7 (16-114)||(26239871-26239970)
chr7 (16-114)||(33996270-33996365)
chr7 (39-114)||(3519995-3520070)
chr7 (16-102)||(1596624-1596709)
chr7 (20-82)||(48243425-48243487)
chr7 (30-99)||(3038055-3038124)
chr7 (23-114)||(2404364-2404455)
chr7 (16-83)||(6782891-6782958)
chr7 (16-87)||(34027423-34027494)
chr7 (16-95)||(40121899-40121978)
chr7 (67-114)||(44874534-44874581)
chr7 (40-114)||(4886383-4886457)
chr7 (12-50)||(21213061-21213099)
chr7 (30-99)||(11743072-11743141)
chr7 (16-49)||(33667102-33667135)
chr7 (16-49)||(43085558-43085591)
chr7 (16-49)||(46452663-46452696)
chr7 (61-114)||(20305365-20305422)
chr7 (32-112)||(21821852-21821932)
chr7 (70-114)||(22574685-22574729)
chr7 (16-72)||(36993072-36993128)
chr7 (16-48)||(43075332-43075364)
chr7 (16-48)||(43089230-43089262)
chr7 (31-114)||(48417470-48417554)
[»] chr1 (35 HSPs)
chr1 (16-114)||(30369865-30369963)
chr1 (23-114)||(38733188-38733279)
chr1 (16-102)||(2859595-2859681)
chr1 (30-114)||(33156777-33156862)
chr1 (16-100)||(4112976-4113060)
chr1 (30-114)||(26176952-26177036)
chr1 (30-114)||(35772073-35772157)
chr1 (31-114)||(51460398-51460481)
chr1 (16-102)||(4098371-4098456)
chr1 (32-114)||(8870866-8870948)
chr1 (32-114)||(16162979-16163061)
chr1 (16-102)||(17452796-17452882)
chr1 (37-114)||(51460006-51460083)
chr1 (16-100)||(25145690-25145774)
chr1 (18-114)||(31496327-31496423)
chr1 (16-83)||(29265983-29266050)
chr1 (16-94)||(5109280-5109358)
chr1 (32-114)||(38668171-38668253)
chr1 (24-85)||(5572663-5572724)
chr1 (30-114)||(39348308-39348392)
chr1 (62-114)||(4112731-4112783)
chr1 (226-302)||(47981751-47981827)
chr1 (32-95)||(27413393-27413456)
chr1 (224-303)||(30557626-30557705)
chr1 (71-114)||(40524831-40524874)
chr1 (45-103)||(12489162-12489220)
chr1 (13-71)||(34600930-34600988)
chr1 (12-50)||(38668386-38668424)
chr1 (224-302)||(40352483-40352561)
chr1 (30-102)||(11234260-11234333)
chr1 (16-101)||(17402612-17402697)
chr1 (30-95)||(35892335-35892400)
chr1 (30-83)||(40316037-40316090)
chr1 (163-192)||(49142688-49142717)
chr1 (30-101)||(9146832-9146904)
[»] chr2 (25 HSPs)
chr2 (30-114)||(93310-93394)
chr2 (16-102)||(14466378-14466464)
chr2 (16-114)||(16419297-16419395)
chr2 (16-113)||(2029799-2029896)
chr2 (30-114)||(15124739-15124823)
chr2 (12-98)||(36352131-36352217)
chr2 (16-114)||(40379400-40379498)
chr2 (30-114)||(93583-93667)
chr2 (226-297)||(1763299-1763370)
chr2 (25-96)||(7208999-7209070)
chr2 (61-102)||(31700940-31700981)
chr2 (29-105)||(13250222-13250298)
chr2 (62-114)||(40149192-40149244)
chr2 (16-87)||(5509109-5509180)
chr2 (16-82)||(10571000-10571066)
chr2 (12-114)||(15461000-15461102)
chr2 (224-294)||(32596099-32596169)
chr2 (16-105)||(5594057-5594145)
chr2 (66-102)||(34893505-34893541)
chr2 (224-302)||(3853977-3854056)
chr2 (12-114)||(5711630-5711733)
chr2 (16-103)||(29718358-29718445)
chr2 (224-297)||(12110951-12111024)
chr2 (32-101)||(24395909-24395978)
chr2 (16-107)||(5206728-5206820)
[»] scaffold0519 (1 HSPs)
scaffold0519 (16-102)||(1946-2032)
[»] scaffold0129 (1 HSPs)
scaffold0129 (12-102)||(14329-14419)
[»] scaffold0092 (1 HSPs)
scaffold0092 (20-114)||(5689-5783)
[»] scaffold0045 (1 HSPs)
scaffold0045 (32-114)||(41162-41244)
[»] chr6 (23 HSPs)
chr6 (12-114)||(6542899-6543001)
chr6 (16-114)||(7638804-7638902)
chr6 (16-102)||(13353231-13353317)
chr6 (16-102)||(33796356-33796442)
chr6 (16-114)||(12330135-12330233)
chr6 (30-114)||(33631761-33631845)
chr6 (31-114)||(3921603-3921686)
chr6 (16-114)||(33494569-33494667)
chr6 (30-114)||(11085625-11085709)
chr6 (16-114)||(4868768-4868867)
chr6 (12-94)||(9705046-9705129)
chr6 (23-113)||(3680049-3680139)
chr6 (16-105)||(27993606-27993696)
chr6 (25-105)||(13740720-13740800)
chr6 (25-105)||(13746220-13746300)
chr6 (220-296)||(16540227-16540303)
chr6 (30-102)||(30256622-30256694)
chr6 (71-114)||(17147851-17147894)
chr6 (71-114)||(30505587-30505630)
chr6 (16-50)||(6066005-6066039)
chr6 (40-101)||(6237676-6237737)
chr6 (16-101)||(24554147-24554232)
chr6 (66-114)||(31961023-31961071)
[»] chr3 (21 HSPs)
chr3 (16-114)||(54567922-54568020)
chr3 (19-114)||(8142603-8142698)
chr3 (220-295)||(21261200-21261275)
chr3 (16-102)||(35038396-35038482)
chr3 (16-102)||(54368546-54368632)
chr3 (30-114)||(4155368-4155452)
chr3 (30-114)||(16926905-16926989)
chr3 (30-114)||(49629649-49629733)
chr3 (16-114)||(20327805-20327903)
chr3 (68-114)||(46139344-46139390)
chr3 (30-114)||(20303341-20303425)
chr3 (66-114)||(19954408-19954456)
chr3 (20-76)||(27086624-27086680)
chr3 (16-100)||(45828049-45828133)
chr3 (16-87)||(1723059-1723130)
chr3 (16-114)||(16239621-16239720)
chr3 (16-111)||(26272283-26272378)
chr3 (12-50)||(7697418-7697456)
chr3 (16-86)||(45138955-45139025)
chr3 (16-85)||(17638264-17638333)
chr3 (16-77)||(37246846-37246907)
[»] scaffold0692 (1 HSPs)
scaffold0692 (30-114)||(5710-5794)
[»] scaffold0400 (1 HSPs)
scaffold0400 (31-114)||(3890-3973)
[»] scaffold0365 (1 HSPs)
scaffold0365 (31-114)||(4534-4617)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-87)||(56485-56560)
[»] scaffold0168 (1 HSPs)
scaffold0168 (220-270)||(31949-31999)
[»] scaffold0083 (1 HSPs)
scaffold0083 (68-114)||(51355-51401)
[»] scaffold0172 (1 HSPs)
scaffold0172 (224-297)||(15217-15290)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 203 - 366
Target Start/End: Original strand, 4645922 - 4646092
Alignment:
Q  203 ttacaagccgtttttgtaattacttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgca--caac-----caaacac 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |  ||||     | | | |    
T  4645922 ttacaagccgtttttgtaattacttttaaccaaaataaattttacagaatcaatttcatcaaaatcaactctcaccaccgaaatcaactctcaccaccgc 4646021  T
Q  296 actctaagatcgtaagatcctgtattagggacttgtaattggtgtggtaggccaattaaagatgtactact 366  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4646022 acactaagatcctaagatcctgtattagggacttgtaattggtgtggtaggccaattaatgatgtactact 4646092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 4645668 - 4645770
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgct 111  Q
    ||||||||||||||||  ||||||||||| |||||||||| ||||| |||||||||||||| |||| |||||||||| |||||||||||||||| |||||    
T  4645668 atcatcaccttacaagccggttttgtgggattgtgttagactcaaccatgatttataagatagtatcagagcctctcaaagatccattgggtcacctgct 4645767  T
Q  112 atc 114  Q
    |||    
T  4645768 atc 4645770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 6218234 - 6218332
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||| |||||||||||  |||| | ||||| ||||||||||| ||||||||||||||||||||||| ||| || |||||    
T  6218234 tcacctcacaagacggttttgtggagttgtgttagacacaaccacgatttctaagatggtatcagagcctctccaagatccattggatcacctactatc 6218332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 22231362 - 22231264
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||||||||| |||||||||| || ||||||||    
T  22231362 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaaaatccattgggccacctgctatc 22231264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 4884334 - 4884283
Alignment:
Q  308 taagatcctgtattagggacttgtaattggtgtggtaggccaattaaagatg 359  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  4884334 taagatcctgtattagggacttgtaattggtgcggtacgccaattaaagatg 4884283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 21646555 - 21646457
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||| |||||| ||||| | | ||||   |||| | ||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  21646555 tcaccttacaagtcggttttatggggctctattaggcccaaccacgatttttaagatggtattagagtctctccaagattcattgggtcacctgctatc 21646457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 40717495 - 40717409
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| | |||| |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||||||||| ||||||||||    
T  40717495 tcacctcaaaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaatatccattggg 40717409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 7926372 - 7926456
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||| ||||||||   |||| | |||||  |||||||||| |||||||||||||||||||||||| || ||||||||    
T  7926372 ggttttgtggggctgtgttaggcccaaccaagatttcgaagatggtatcagagcctctccaagatccattgggccacctgctatc 7926456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 22445482 - 22445566
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattg 100  Q
    ||||| ||||||| ||||||||||||||||||||||  |||| |  | || ||||||||||| ||||||||| ||||||||||||    
T  22445482 tcaccctacaagtcggttttgtggggttgtgttagacccaaccacaaattctaagatggtatcagagcctcttcaagatccattg 22445566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 17111593 - 17111684
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatc 107  Q
    |||||||| ||  ||||||||||||||||||||||   |||| | ||||| ||||||||||| |||| || ||||||||||||| |||||||    
T  17111593 tcaccttaaaaactggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagtctttccaagatccattaggtcatc 17111684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 35485257 - 35485343
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||||||| | |||||||||||||||||||||||  ||||||  |  | |||||||||||||||| || |||| |||||||||||    
T  35485257 tcaccttacacgctggttttgtggggttgtgttagacccaactacaaaatctaagatggtattagagtctgtccatgatccattggg 35485343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 20232036 - 20232108
Alignment:
Q  224 acttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacaca 296  Q
    ||||||||||||||| ||||||| | |||||||| || ||||||||| |||||| | |||| |||||||||||    
T  20232036 acttttaaccaaaatcaattttataaaatcaattccaccaaaatcaattctcaccaccgcataaccaaacaca 20232108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 35788689 - 35788788
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||| ||||||||||||||   |||| | ||||| ||||||||||| ||||||| ||||||||||| ||||| || ||||||||    
T  35788689 tcacctcacaagccggttttatggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatc 35788788  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 4905775 - 4905693
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctat 113  Q
    ||||| ||| ||| ||||||  ||||| ||||||| ||||||| ||| |||||||||||||| ||||||||| || |||||||    
T  4905775 gttttttggagttttgttaggctcaaccatgatttctaagatgatatcagagcctctccaagctccattgggccacctgctat 4905693  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 32002353 - 32002450
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||| | ||||||||| |||||| |||||  |||  |  |||| ||||||||||| ||| ||||||||||||| ||| ||||||||||||||    
T  32002353 tcaccttacaaatcggttttgtgaggttgtattagacccaaacacaatttttaagatggtatcagaacctctccaagatctatt-ggtcatctgctatc 32002450  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 50543621 - 50543539
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccat 98  Q
    |||||| |||||  |||||||||| ||||||||||   |||| | ||||| ||||||| ||| ||||||||||||||||||||    
T  50543621 tcacctcacaagccggttttgtggagttgtgttaggcccaaccacgatttctaagatgatatcagagcctctccaagatccat 50543539  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 52559593 - 52559667
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctc 86  Q
    |||||||||| |||||  |||||||||||||||||||||   |||| ||||||| |||||| |||| ||||||||    
T  52559593 atcatcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatagtatcagagcctc 52559667  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 2326335 - 2326258
Alignment:
Q  220 aattacttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacac 297  Q
    ||||||||||||| ||||| ||||||||||||||||||  |||||||| || ||||   | ||||||| |||||||||    
T  2326335 aattacttttaacaaaaatcaattttacataatcaattatatcaaaattaattctcctcaccgcacaatcaaacacac 2326258  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 21041432 - 21041477
Alignment:
Q  67 taagatggtattagagcctctccaagatccattgggtcatctgcta 112  Q
    |||||| |||||||||||||||||||||||| |||| |||||||||    
T  21041432 taagatagtattagagcctctccaagatccaatgggccatctgcta 21041477  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 28245770 - 28245717
Alignment:
Q  61 gatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||    
T  28245770 gatttctaatatggtatcagagcctctccaagatccattgggccacctgctatc 28245717  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 40716673 - 40716576
Alignment:
Q  18 accttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctc-tccaagatccattgggtcatctgctatc 114  Q
    ||||||||||  || ||||||||||||||||||   |||| ||| ||| ||||||||||| |||||||| |||| ||||| ||||| || ||||||||    
T  40716673 accttacaagccggatttgtggggttgtgttaggcccaaccatggtttctaagatggtatcagagcctcatccacgatccgttgggccacctgctatc 40716576  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 30530170 - 30530118
Alignment:
Q  62 atttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||| ||||||||||| ||||||||||||||||||||| || || ||||||||    
T  30530170 atttctaagatggtatcagagcctctccaagatccattaggccacctgctatc 30530118  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 34358070 - 34357998
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||||||||||||||||||  ||||  | ||||| ||||||| ||| ||||||||| ||||||| ||||||    
T  34358070 ggttttgtggggttgtgttaggctcaaacacgatttctaagatgatatcagagcctctacaagatctattggg 34357998  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 35609765 - 35609697
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcc 84  Q
    |||||| |||||  |||||||||||||||||| |||  |||| ||||||| ||||||||||| ||||||    
T  35609765 tcacctcacaagccggttttgtggggttgtgtaagacccaaccatgatttctaagatggtatcagagcc 35609697  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 4464341 - 4464424
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||| |||||||  |||| | || || ||||||||||| ||||||| || |||||||||||||||||  |||||||    
T  4464341 ttttgtggggttttgttagacccaaccacgaattctaagatggtatcagagcctccttcaagatccattgggtcacatgctatc 4464424  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 5398221 - 5398178
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatg 73  Q
    |||||||||||||||||||||||||||| | ||||| |||||||    
T  5398221 ggttttgtggggttgtgttagattcaaccacgatttttaagatg 5398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 14783245 - 14783170
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctct 87  Q
    |||||||||| |||||  |||||||||||||||||||||   |||| | ||||| ||| ||||||| |||||||||    
T  14783245 atcatcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 14783170  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 35819167 - 35819084
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||| |||||||||||   |||| | ||||| |||||||| || |||| ||||| ||||||||||||| || ||||||||    
T  35819167 gttttgtgaggttgtgttaggcccaaccacgatttttaagatggcatcagagtctctctaagatccattgggccacctgctatc 35819084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 53713526 - 53713480
Alignment:
Q  220 aattacttttaaccaaaataaattttacataatcaatttcatcaaaat 267  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  53713526 aattacttttaac-aaaatcaattttacataatcaattttatcaaaat 53713480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 1215779 - 1215853
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctcca 90  Q
    ||||||| |||| || ||||||||  || ||||||| ||||| ||||||| |||||| |||| ||||||||||||    
T  1215779 tcaccttgcaagctgattttgtggaattatgttagactcaaccatgatttctaagattgtatcagagcctctcca 1215853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 35797016 - 35796946
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||||||||||||||||    ||||||  |||| ||||||||||| ||||||||| | |||||||||||    
T  35797016 gttttgtggggttgtgttaagcccaactaccatttctaagatggtatcagagcctcttcgagatccattgg 35796946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 5398530 - 5398473
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatg 73  Q
    |||||| |||||  ||||||||||||||||||||| | |||| ||||||| |||||||    
T  5398530 tcacctcacaagccggttttgtggggttgtgttaggtccaaccatgatttctaagatg 5398473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 13637426 - 13637506
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcc-tctccaagatccattggg 102  Q
    |||| |||||||||||||||||| | |||  |||| | ||||| ||| |||||||||||||| |||| ||||||| |||||    
T  13637426 acaatttggttttgtggggttgtctaagacccaaccacgatttctaaaatggtattagagccttctctaagatccgttggg 13637506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 16552074 - 16552130
Alignment:
Q  219 taattacttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctc 275  Q
    |||||||||||||||||||| |||| || | ||| |||| |||||||||||| ||||    
T  16552074 taattacttttaaccaaaatcaattatatagaattaattccatcaaaatcaattctc 16552130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 34795810 - 34795734
Alignment:
Q  220 aattacttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacaca 296  Q
    |||||||| |||||||||| || |||||||||||||||  |  |||||||| |||  ||| ||||||| ||||||||    
T  34795810 aattacttgtaaccaaaatcaagtttacataatcaattgaacaaaaatcaattcttcctaccgcacaaacaaacaca 34795734  T

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Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 43743034 - 43743102
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccatt 99  Q
    ||||| ||||||| |||||||   ||| | |||||||||||| |||| |||||||||| ||||||||||    
T  43743034 gttttttggggttatgttagacctaaccacgatttataagatagtatcagagcctctcaaagatccatt 43743102  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 25258355 - 25258257
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||| |||||||||||||||||||| | ||||| | ||||| ||||||||||| ||||| |||||||||||||||||| || ||||||||    
T  25258355 tcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatcagagcttctccaagatccattgggccacctgctatc 25258257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 25322145 - 25322047
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||| |||||||||||||||||||| | ||||| | ||||| ||||||||||| ||||| |||||||||||||||||| || ||||||||    
T  25322145 tcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgatttctaagatggtatcagagcttctccaagatccattgggccacctgctatc 25322047  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 32908997 - 32908908
Alignment:
Q  25 aagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||| |||||||||||||||||||||| ||||| |  |||| ||||||| ||||||||||||| |||||||||||||| |||||||||||    
T  32908997 aagtcggttttgtggggttgtgttagactcaaccacaatttctaagatgatattagagcctcttcaagatccattgggccatctgctatc 32908908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 24346791 - 24346692
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  ||||||||||||||||||||||  |||| | ||||| ||||||||||| ||||||| ||||||||||||||||| || ||||||||    
T  24346791 tcacctcacaagccggttttgtggggttgtgttagacccaaccacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatc 24346692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 15480352 - 15480450
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| ||||| ||||||||||||||| ||||||   |||| | ||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  15480352 tcacctcacaagctggttttgtggggttctgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatc 15480450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 24528570 - 24528655
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||| |||||  |||||||||||||||||||||   |||| ||||||| ||||||||||| |||||||||||| ||||||||||    
T  24528570 tcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagcctctccatgatccattgg 24528655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 6919468 - 6919385
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||| |||||||||||  ||||| | ||||| ||||||||||| | ||||||| |||||||||||| |||||||||||||    
T  6919468 gttttgtgaggttgtgttaggctcaaccacgatttttaagatggtatcaaagcctcttcaagatccattgagtcatctgctatc 6919385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 24270159 - 24270061
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  ||||||||||||||||||||||  |||| | ||||| ||||||||||| ||||||| ||||||||||||||||| || ||||||||    
T  24270159 tcacctcacaagccggttttgtggggttgtgttaga-ccaaccacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatc 24270061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 2063781 - 2063703
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||| |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||||| |||||||||||||    
T  2063781 acaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgg 2063703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 9368625 - 9368723
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| || |||| |||| |||||| ||||||||| |||||||||||||| || ||||||||    
T  9368625 tcacctcacaagccggttttgtggggttgtgttaggcccaaccataatttctaaggtggtatcagagcctcttcaagatccattgggccacctgctatc 9368723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 17150501 - 17150436
Alignment:
Q  37 tggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||||  ||||||| ||||| ||||||||||| ||||||||| ||||||||||||||    
T  17150501 tggggttgtgttaggctcaactacgatttttaagatggtatcagagcctcttcaagatccattggg 17150436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 41667047 - 41666948
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||| ||||||||||| ||||| || ||||||||    
T  41667047 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatc 41666948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 18333753 - 18333655
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| | || || ||||||||||| ||||||||| |||||||||| ||| || ||||||||    
T  18333753 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgaattctaagatggtatcagagcctcttcaagatccatcgggccacctgctatc 18333655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 95510 - 95457
Alignment:
Q  61 gatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||| ||||||||||| |||||||||||||||||||||||| || ||||||||    
T  95510 gatttctaagatggtatcagagcctctccaagatccattgggccacctgctatc 95457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 20225071 - 20225155
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattg 100  Q
    |||||| |||||| | ||||||||||||||||||| |||||| | ||||| ||| ||| ||| | ||||||| ||||||||||||    
T  20225071 tcacctcacaagtcgattttgtggggttgtgttaggttcaaccacgatttctaaaatgatatcatagcctcttcaagatccattg 20225155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 30770272 - 30770225
Alignment:
Q  68 aagatggtattagagcctctccaagatccattgggtcatctgctatcg 115  Q
    |||||||||| |||||||||||||||||||||||| || |||||||||    
T  30770272 aagatggtatcagagcctctccaagatccattgggccacctgctatcg 30770225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 24531645 - 24531727
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||    |||| | ||||| ||||||||||| |||||||||| | ||||||||||| || ||||||||    
T  24531645 ttttgtggggttgtgttatgcccaaccacgatttctaagatggtatcagagcctctctatgatccattgggccacctgctatc 24531727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 2986066 - 2986005
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtat 77  Q
    |||||||||||||||| ||||||||||||||||||  ||||| |  |||| |||||||||||    
T  2986066 tcaccttacaagttggatttgtggggttgtgttaggctcaaccaccatttctaagatggtat 2986005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 43117694 - 43117775
Alignment:
Q  33 tttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||   |||| | ||||| |||||| |||| ||||||| ||||||||| |||||| || ||||||||    
T  43117694 tttgtggggttgtgttaggcccaacaacgatttctaagatagtatcagagcctttccaagatctattgggccacctgctatc 43117775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 6413697 - 6413613
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| ||||||||||||| |  |||| | ||||| ||| ||||||| | ||||||| |||||||||||||| || ||||||||    
T  6413697 ggttttttggggttgtgttaaacccaacaacgatttctaatatggtatcaaagcctcttcaagatccattgggccacctgctatc 6413613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 8081153 - 8081098
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct 85  Q
    |||||||||||||||||||||   |||| ||||||| ||||||||||| |||||||    
T  8081153 ggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagcct 8081098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 38265061 - 38265110
Alignment:
Q  227 tttaaccaaaataaattttacataatcaatttcatcaaaatcaactctca 276  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||| |||||    
T  38265061 tttaaccaaaatcaattctacaaaatcaattttatcaaaatcaattctca 38265110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 33337495 - 33337451
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatgg 74  Q
    ||||||||||||||||||||| |||||| | ||||| ||||||||    
T  33337495 ggttttgtggggttgtgttaggttcaaccacgatttctaagatgg 33337451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 36040534 - 36040474
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagat 72  Q
    |||||||||| ||||||| ||||| | ||||||||||||  ||||| ||||||| ||||||    
T  36040534 atcatcacctcacaagtttgttttatagggttgtgttaggctcaaccatgatttctaagat 36040474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 81872 - 81957
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    ||||||||||||| |||||||||||||||||||||   |||| | ||||| ||||||||||| |||||||||||||||||||||||    
T  81872 tcaccttacaagtcggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgg 81957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 24532479 - 24532377
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgct 111  Q
    |||||||||| |||||  |||||||||||||||||||||   |||| ||||||| ||||||||||| |||||| || |||||||||||||| || |||||    
T  24532479 atcatcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaagatggtatcagagccccttcaagatccattgggccacctgct 24532380  T
Q  112 atc 114  Q
    |||    
T  24532379 atc 24532377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 39052983 - 39052900
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccatt 99  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| |||||||||||||||||||||||||||||||||    
T  39052983 tcacctcacaagccggttttgtggggttgtgttaggcccaacaacgatttctaagatggtattagagcctctccaagatccatt 39052900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 8084157 - 8084243
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| ||||| |||||||| || |||||||||||  |||| | ||||| ||||||||||| ||||||||||||||||||||||||    
T  8084157 tcacctcacaagctggttttgcggagttgtgttagacccaaccacgatttctaagatggtatcagagcctctccaagatccattggg 8084243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 11232248 - 11232162
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||||||||   |||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  11232248 tcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattggg 11232162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 11232483 - 11232397
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||||||||   |||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  11232483 tcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattggg 11232397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 12688103 - 12688200
Alignment:
Q  17 caccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||| |||||  |||||||||| ||| ||||||| ||||  | ||||| ||||||| ||||||||||||| |||||||||||||| || ||||||||    
T  12688103 cacctcacaagccggttttgtggagttatgttagactcaaacacgatttctaagatgatattagagcctcttcaagatccattgggccacctgctatc 12688200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 10615440 - 10615508
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattg 100  Q
    ||||||||||||||||||| |  ||| || |||| ||||||||||| ||||||||||||||||||||||    
T  10615440 ttttgtggggttgtgttaggtcaaaccataatttctaagatggtatcagagcctctccaagatccattg 10615508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 3157598 - 3157515
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||  ||||| |  |||||||||||| ||| ||||||||||||| |||||||||  || ||||||||    
T  3157598 gttttgtggggttgtgttaggctcaaccaccatttataagatgatatcagagcctctccaaaatccattggaccacctgctatc 3157515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 20301306 - 20301389
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||| |||||||||||   |||| | ||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  20301306 gttttgtgaggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatc 20301389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 21087938 - 21088021
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||| |||||||||||   |||| | ||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  21087938 gttttgtgaggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatc 21088021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 5932223 - 5932153
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    ||||||||||||||||||||   |||| |  |||| ||||||||||| |||||||||||||||||||||||    
T  5932223 gttttgtggggttgtgttaggcccaaccaccatttttaagatggtatcagagcctctccaagatccattgg 5932153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 31197645 - 31197742
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| | |||| |||||||| ||||||||||||   |||| | ||||| ||||||||||| ||||||||||| |||||||||||| || ||||||||    
T  31197645 tcacctcaaaagtcggttttgtagggttgtgttaggcccaacca-gatttctaagatggtatcagagcctctccgagatccattgggccacctgctatc 31197742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 10614977 - 10614908
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||||||||||| ||||  ||||| | ||||||||||||| ||| | |||||||||||||||||||||    
T  10614977 ttttgtggggttgtattaggctcaaccacgatttataagatgatatcatagcctctccaagatccattgg 10614908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 18004333 - 18004285
Alignment:
Q  66 ataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||    
T  18004333 ataagatggtatcagagcctctccaagatccattgggccacctgctatc 18004285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 41790703 - 41790786
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||| |||||||||   |||| | ||||| ||||||||||| ||||||||| |||||||||||||| || ||||||||    
T  41790703 ggttttgtggg-ttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatc 41790786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 27439594 - 27439512
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtca 105  Q
    ||||| ||||||||||| ||||||| ||  ||||||| || || ||||||||||| |||| ||||| ||||||| ||||||||    
T  27439594 acaagctggttttgtggcgttgtgtcaggctcaactacgagttttaagatggtatcagagtctctctaagatccgttgggtca 27439512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 37868637 - 37868551
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| ||||| |||||||||||  |||||||||    ||| | ||||| ||||||||||| | ||||||||||||||||||||||    
T  37868637 tcacctcacaagctggttttgtggaattgtgttaggcctaaccacgatttttaagatggtatcatagcctctccaagatccattggg 37868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 36917478 - 36917409
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattg 100  Q
    |||||||||||||||||||    |||| |  |||| ||||||||||| ||||||||||||||||||||||    
T  36917478 gttttgtggggttgtgttaagcacaaccaccatttctaagatggtatcagagcctctccaagatccattg 36917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 17469848 - 17469919
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctct 87  Q
    |||||| |||||  |||||||||||||||||||||  ||||| | ||||| ||| ||||||| |||||||||    
T  17469848 tcacctcacaagccggttttgtggggttgtgttaggctcaaccacgatttctaatatggtatcagagcctct 17469919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 20094848 - 20094763
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||| ||||   |||| | |||||||||| |||||| ||||  ||| ||||||||||||||    
T  20094848 tcaccttacaagccggttttgtggggttgt-ttaggcccaaccacgatttataagttggtatcagagtttcttcaagatccattggg 20094763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 34842722 - 34842796
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtc 104  Q
    |||||||||||||||||||||  ||||| | ||||| ||| ||||||| ||||||||| || ||| | |||||||    
T  34842722 ggttttgtggggttgtgttaggctcaaccacgatttctaatatggtatcagagcctcttcacgattctttgggtc 34842796  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 10615663 - 10615744
Alignment:
Q  19 ccttacaagttggttttgt-ggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccatt 99  Q
    |||||||||| |||||||| |||||||| ||||  ||||| | | ||| ||||||| ||||||| |||||| ||||||||||    
T  10615663 ccttacaagtcggttttgtgggggttgtattaggctcaaccacggtttctaagatgatattagaacctctctaagatccatt 10615744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 36779467 - 36779539
Alignment:
Q  224 acttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacaca 296  Q
    |||||||| |||||| |||| |||| ||||||||  ||||||||||| ||||   | ||||||||||||||||    
T  36779467 acttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaacaca 36779539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 4506962 - 4507060
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||| |||||| |||||||||||||||  |||||| ||||| |||||| |||| ||||||| | ||||||||||||||||| ||||||||    
T  4506962 tcacctcacaagtcggttttatggggttgtgttagacccaactacgatttctaagattgtatcagagccttttcaagatccattgggtcacctgctatc 4507060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 25620166 - 25620264
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| |||||||||||||||||||||||| || ||||||||    
T  25620166 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgggccacctgctatc 25620264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 29469635 - 29469721
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||||||||   |||| | ||||| ||| ||||||| ||||||||||||||||||||||||    
T  29469635 tcaccttacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctctccaagatccattggg 29469721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 18826535 - 18826444
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||| || ||||||||||||||||||| |||||| || |||| ||||||| ||| ||||||||| ||||||||| || | |||||||||||    
T  18826535 acaagctgattttgtggggttgtgttaggttcaaccataatttctaagatgatatcagagcctcttcaagatccactgagccatctgctatc 18826444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 28080701 - 28080792
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||||||||||| |||||||| |||| | ||||| ||||||| ||| ||||||||| ||||||| |||||| || ||||||||    
T  28080701 acaagtcggttttgtggggttatgttagatccaaccacgatttctaagatgatatcagagcctcttcaagatctattgggccacctgctatc 28080792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 21861324 - 21861410
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  ||||||||||| |||||||||   |||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  21861324 tcaccttacaagccggttttgtgggattgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattggg 21861410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 33834237 - 33834319
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||   |||| |  |||| ||||||||||| |||||||||||||||||||||||| || ||||||||    
T  33834237 ttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacctgctatc 33834319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 36277280 - 36277194
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| |||||| | |||||||||||||||||||   |||| | ||||| ||||||| ||| ||||||||||||||||||||||||    
T  36277280 tcacctcacaagtcgattttgtggggttgtgttagtcccaaccacgatttctaagatgttatcagagcctctccaagatccattggg 36277194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 36993346 - 36993276
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||  ||||||||||| |||| ||||||| ||||||||||| ||||||||| ||||||||||||||    
T  36993346 ttttgtggaattgtgttagatccaaccatgatttctaagatggtatcagagcctcttcaagatccattggg 36993276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 23796242 - 23796175
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtatta 79  Q
    |||||||||| |||| ||| |||||||||||||||||||  ||||| ||||||| |||||||||||||    
T  23796242 atcatcacctcacaaattgattttgtggggttgtgttaggctcaaccatgatttttaagatggtatta 23796175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 26239970 - 26239871
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||| ||| ||||||||||||||||||  |||| |  |||| ||||||||||| ||||||| ||||||||||| ||||| || ||||||||    
T  26239970 tcacctcacaagtcggtattgtggggttgtgttagacccaaccacaatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatc 26239871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 33996365 - 33996270
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||| |||||||||| ||||||||||   |||| | ||||| ||||||||||| |||||||||||   |||||||||| || ||||||||    
T  33996365 tcacctcacaagtcggttttgtggagttgtgttaggcccaaccacgatttctaagatggtatcagagcctctcc---atccattgggccacctgctatc 33996270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 3520070 - 3519995
Alignment:
Q  39 gggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||| |||||| | ||||| | || |||||| |||||||||||| ||||||||||| || ||||||||    
T  3520070 gggttgtgttaggttcaaccacgatttcttagttggtatcagagcctctccatgatccattgggccacctgctatc 3519995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 1596624 - 1596709
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  ||||| |||||||||||||||    ||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  1596624 tcaccttacaagccggttt-gtggggttgtgttaggcctaaccacaatttctaagatggtatcagagcctctccaagatccattggg 1596709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 48243487 - 48243425
Alignment:
Q  20 cttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagag 82  Q
    ||||||||  ||||||||||||||||||||||  |||| ||||||| ||||||||||| ||||    
T  48243487 cttacaagccggttttgtggggttgtgttagacccaaccatgatttttaagatggtatcagag 48243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 3038124 - 3038055
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccatt 99  Q
    |||||||||||||||||||||   |||| ||||||| ||||||  ||| ||||||||| |||||||||||    
T  3038124 ggttttgtggggttgtgttaggcccaaccatgatttctaagataatatcagagcctcttcaagatccatt 3038055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 2404455 - 2404364
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||| | ||| |||||||   ||||| | ||||| ||||||||||| ||||||||| | | ||||||||||||| ||||||||    
T  2404455 acaagtcggttttatagggctgtgttaagctcaaccacgatttctaagatggtatcagagcctcttcgaaatccattgggtcacctgctatc 2404364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 6782891 - 6782958
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagc 83  Q
    ||||||||||||  |||||||||||||||||||||  ||||| | ||||| ||| ||||||| |||||    
T  6782891 tcaccttacaagccggttttgtggggttgtgttaggctcaaccacgatttctaacatggtatcagagc 6782958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34027423 - 34027494
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctct 87  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||| |||||||||||||||||    
T  34027423 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtattagagcctct 34027494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 40121978 - 40121899
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatc 95  Q
    ||||| ||||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||| ||| |||||    
T  40121978 tcaccctacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctatcctagatc 40121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 44874581 - 44874534
Alignment:
Q  67 taagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||| |||| |||| ||||||||||||||||| ||||||||    
T  44874581 taagatggtatcagagtctcttcaagatccattgggtcacctgctatc 44874534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 4886383 - 4886457
Alignment:
Q  40 ggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||   |||| | ||||| ||||||||||| || | ||||||||||||||||||| || ||||||||    
T  4886383 ggttgtgttaggcccaaccacgatttctaagatggtatcagggtctctccaagatccattgggccacctgctatc 4886457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 21213099 - 21213061
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttag 50  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  21213099 atcatcacctcacaagttggttttgtggagttgtgttag 21213061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 11743072 - 11743141
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccatt 99  Q
    ||||||||||  |||||||||| | ||| | ||||| ||||||| ||| ||||||||| |||||||||||    
T  11743072 ggttttgtggaattgtgttagacttaaccacgatttttaagatgatatcagagcctcttcaagatccatt 11743141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 33667135 - 33667102
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgtta 49  Q
    ||||||||||||||||||||||||||||| ||||    
T  33667135 tcaccttacaagttggttttgtggggttgagtta 33667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 43085591 - 43085558
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgtta 49  Q
    |||||| |||||||||||||||||||||||||||    
T  43085591 tcacctcacaagttggttttgtggggttgtgtta 43085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 46452663 - 46452696
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgtta 49  Q
    |||||| |||||||||||||||||||||||||||    
T  46452663 tcacctcacaagttggttttgtggggttgtgtta 46452696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 20305365 - 20305422
Alignment:
Q  61 gatttataagatggtattagagcctctccaagatccattgg----gtcatctgctatc 114  Q
    ||||| ||||||||||| ||||||||| |||||||||||||    |||||||||||||    
T  20305365 gatttttaagatggtatcagagcctcttcaagatccattggatgggtcatctgctatc 20305422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 21821852 - 21821932
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgcta 112  Q
    ||||||||| |||||||||   |||| | ||||| ||||||||||| ||||||||| |||||| | ||||| || ||||||    
T  21821852 ttttgtgggattgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatacgttgggccaactgcta 21821932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 22574685 - 22574729
Alignment:
Q  70 gatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||| |||| ||||||||||||||||||| || ||||||||    
T  22574685 gatggtataagagtctctccaagatccattgggccacctgctatc 22574729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 36993128 - 36993072
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagat 72  Q
    |||||| ||||| ||||||||||||||||||||||   |||| ||||||| ||||||    
T  36993128 tcacctcacaagctggttttgtggggttgtgttaggcccaaccatgatttctaagat 36993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 43075364 - 43075332
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgtt 48  Q
    |||||| ||||||||||||||||||||||||||    
T  43075364 tcacctcacaagttggttttgtggggttgtgtt 43075332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 43089262 - 43089230
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgtt 48  Q
    |||||| ||||||||||||||||||||||||||    
T  43089262 tcacctcacaagttggttttgtggggttgtgtt 43089230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 48417554 - 48417470
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcc-tctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||   |||| |  |||| | |||||||||||||||| |||||  ||||||||||| || ||||||||    
T  48417554 gttttgtggggttgtgttaggcccaaccacaatttcttagatggtattagagccttctccttgatccattgggccacctgctatc 48417470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 30369865 - 30369963
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| ||||| | ||||||||||||||||||||   |||| | ||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  30369865 tcacctcacaagatagttttgtggggttgtgttaggcccaaccacgatttctaagattgtatcagagcctctccaagatccattgggtcacctgctatc 30369963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 38733188 - 38733279
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| ||||||||| | ||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||||||  || ||||||||    
T  38733188 acaagtcggttttgtgagattgtgttaggttcaaccacgatttctaagatggtatcagagtctctccaagatccattggaccacctgctatc 38733279  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 2859681 - 2859595
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| |||||  ||||||||| |||||||||||   |||| || |||| ||||||||||||||||||||| ||||||||||||||    
T  2859681 tcacctcacaagccggttttgtgaggttgtgttagccccaaccatcatttctaagatggtattagagcctcttcaagatccattggg 2859595  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 33156777 - 33156862
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||||   |||| | ||||| ||||||||||||||||||| ||||||||||| |||| ||| ||||||||    
T  33156777 ggttttgtggggttgtgttaggcccaaccacgatttctaagatggtattagagcctactccaagatccgttggttcacctgctatc 33156862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 4113060 - 4112976
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattg 100  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| |||||||||||  |||||||||||||||||||||    
T  4113060 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcggagcctctccaagatccattg 4112976  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 26176952 - 26177036
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||||   ||||   ||||| ||||||| ||| |||||||||||||||||||||||| || ||||||||    
T  26176952 ggttttgtggggttgtgttaggcccaaccgcgatttctaagatgatatcagagcctctccaagatccattgggccacctgctatc 26177036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 35772073 - 35772157
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||||   |||| | ||||| ||||||||||| |||||||   |||||||||||||| |||||||||||    
T  35772073 ggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagccttctcaagatccattgggccatctgctatc 35772157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 51460481 - 51460398
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||   |||| || |||| ||| ||| ||| |||||||||||||||||||||||| || ||||||||    
T  51460481 gttttgtggggttgtgttaggcccaaccataatttctaaaatgatatcagagcctctccaagatccattgggccacctgctatc 51460398  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 4098456 - 4098371
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||||||||||||||||||| ||||||||||||   |||| | ||||| |||| |||||| |||| |||| ||||||||||||||    
T  4098456 tcaccttacaagttggttttgt-gggttgtgttaggcccaaccacgatttctaagttggtatcagagactcttcaagatccattggg 4098371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 8870948 - 8870866
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||| | |||| |  |||| ||||||||||| |||| |||||||| |||||||||| || ||||||||    
T  8870948 ttttgtggggttgtgttaggtccaaccaccatttctaagatggtatcagagtctctccaatatccattgggccacctgctatc 8870866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 16162979 - 16163061
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||| ||||| |  |||| ||||||| ||| | ||||||||||||||||| |||| || ||||||||    
T  16162979 ttttgtggggttgtgttagactcaaccacaatttttaagatgatatcaaagcctctccaagatccaatgggccacctgctatc 16163061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 17452882 - 17452796
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| |||||  |||||||||||||||||||||    ||| | ||||| |||||||||||||||||||||| || ||||||||||    
T  17452882 tcacctcacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagatggtattagagcctctctaaaatccattggg 17452796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 51460083 - 51460006
Alignment:
Q  37 tggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||   |||| |  |||| |||||||||||||| ||||||||||||||||||||| || ||||||||    
T  51460083 tggggttgtgttaggcccaaccacaatttctaagatggtattagcgcctctccaagatccattgggccacctgctatc 51460006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 25145774 - 25145690
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattg 100  Q
    |||||| |||||  || ||||||||||||||||||   |||| ||||||| ||||||| ||| ||||||||||||||||| ||||    
T  25145774 tcacctcacaagccggatttgtggggttgtgttaggcccaaccatgatttctaagatgatatcagagcctctccaagatctattg 25145690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 31496423 - 31496327
Alignment:
Q  18 accttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||  |||||| ||||||||||||||| ||||  | ||||| |||||| ||||||||| ||||  ||||||||||||  || ||||||||    
T  31496423 accttacaagccggttttatggggttgtgttagactcaatcacgatttctaagatagtattagagtctctttaagatccattggaccacctgctatc 31496327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 29265983 - 29266050
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagc 83  Q
    |||||||||||| ||||||||||||||||||||||   |||| | ||||| ||||||||||| |||||    
T  29265983 tcaccttacaagctggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagc 29266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 5109280 - 5109358
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagat 94  Q
    |||||| |||||||| ||||||||| ||||||||| | ||| ||  |||| ||||||||||| |||| |||||||||||    
T  5109280 tcacctcacaagttgtttttgtgggattgtgttaggtccaattacaatttttaagatggtatcagagtctctccaagat 5109358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 38668171 - 38668253
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||   |||  |  |||| ||||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  38668171 ttttgtggggttgtgttaggcccaatcacaatttctaagatggtatcagagcctctccatgatccattgggtcacctgttatc 38668253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 5572663 - 5572724
Alignment:
Q  24 caagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct 85  Q
    ||||||||||||||||||||||||||    |||||| ||||| ||| |||||||||||||||    
T  5572663 caagttggttttgtggggttgtgttaagcccaactacgatttctaaaatggtattagagcct 5572724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 39348392 - 39348308
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||| ||||||| ||||||||| || ||||||||    
T  39348392 ggttttgtggggttgtgttaggcccaac-acgatttctaagatggtatcagagcctcctccaaggtccattgggccacctgctatc 39348308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 4112783 - 4112731
Alignment:
Q  62 atttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||| ||||||||||| |||||||||||||||||||||||  || ||||||||    
T  4112783 atttctaagatggtatcagagcctctccaagatccattggaccacctgctatc 4112731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 47981827 - 47981751
Alignment:
Q  226 ttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacactctaa 302  Q
    ||||||||||||| ||||||||| ||||||||| || |||||||| ||||   | | ||||||||||||||| ||||    
T  47981827 ttttaaccaaaattaattttacaaaatcaattttattaaaatcaattctcgtcaccacacaaccaaacacacgctaa 47981751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 27413393 - 27413456
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatc 95  Q
    ||||||| ||||||||||| | |||| | ||||| ||||||| ||| |||||||||||||||||    
T  27413393 ttttgtgaggttgtgttaggtccaaccacgatttctaagatgatatcagagcctctccaagatc 27413456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 30557626 - 30557705
Alignment:
Q  224 acttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacactctaag 303  Q
    ||||||||||||||| |||| |||| ||||||||  ||||||||||| ||||   | |||||||| |||||||| |||||    
T  30557626 acttttaaccaaaatcaattctacagaatcaattctatcaaaatcaattctcctcaccgcacaactaaacacacgctaag 30557705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 40524874 - 40524831
Alignment:
Q  71 atggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  40524874 atggtatcagagcctcttcaagatccattggttcatctgctatc 40524831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 12489220 - 12489162
Alignment:
Q  45 tgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggt 103  Q
    ||||||| ||||| ||||||| ||||||||||| ||||| ||| |||||| ||||||||    
T  12489220 tgttagactcaaccatgatttttaagatggtatcagagcatcttcaagattcattgggt 12489162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 34600930 - 34600988
Alignment:
Q  13 tcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataaga 71  Q
    ||||||||| | |||||| ||||||| ||||||||||| |||||| ||||||| |||||    
T  34600930 tcatcacctcataagttgattttgtgaggttgtgttaggttcaaccatgatttttaaga 34600988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 38668386 - 38668424
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttag 50  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  38668386 atcatcaccttacaagtcggttttgtgggattgtgttag 38668424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 40352483 - 40352561
Alignment:
Q  224 acttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacactctaa 302  Q
    ||||||||||||||| ||||  ||| ||||||||  ||||||||||| ||||   | ||||||||||||||||| ||||    
T  40352483 acttttaaccaaaatcaattccacaaaatcaattctatcaaaatcaattctcctcaccgcacaaccaaacacacactaa 40352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 11234260 - 11234333
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattggg 102  Q
    |||||||||||||||| ||||   |||| |  | |||||||||||||||||||||| ||||||||||| |||||    
T  11234260 ggttttgtggggttgtattaggcccaaccacaaattataagatggtattagagcctcctccaagatccgttggg 11234333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 17402612 - 17402697
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||| | |||| ||||| || ||||||||||||   | || | ||||| ||||||||||| ||||| |||||||||||||||||    
T  17402612 tcacctcaaaagtgggtttcgtagggttgtgttaggcccgaccacgatttttaagatggtatcagagcatctccaagatccattgg 17402697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 35892335 - 35892400
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatc 95  Q
    |||||||||||||| ||||||  ||||| || |||| ||||||||||| |||| || |||||||||    
T  35892335 ggttttgtggggttctgttaggctcaaccataatttctaagatggtatcagagtctatccaagatc 35892400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 40316090 - 40316037
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagc 83  Q
    ||||||||| ||||||||||||| |||| | ||||| ||| |||||||||||||    
T  40316090 ggttttgtgaggttgtgttagatccaaccacgatttctaacatggtattagagc 40316037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 49142688 - 49142717
Alignment:
Q  163 caagtcccacattggatagataagactttg 192  Q
    ||||||||||||||||||||||||||||||    
T  49142688 caagtcccacattggatagataagactttg 49142717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 9146904 - 9146832
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcc-tctccaagatccattgg 101  Q
    |||||||||| |||||| ||   ||||| || |||| ||||||||||| |||||| |||||||||||||||||    
T  9146904 ggttttgtggagttgtgctacgctcaaccataatttctaagatggtatcagagccttctccaagatccattgg 9146832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 93394 - 93310
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||||   |||| | ||||| ||||||||||| |||||||||||||||||||||||| || ||||||||    
T  93394 ggttttgtggggttgtgttaggcccaaccacgatttttaagatggtatcagagcctctccaagatccattgggccacctgctatc 93310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 14466464 - 14466378
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||||||||   |||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  14466464 tcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattggg 14466378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 16419297 - 16419395
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||| ||||   |||| | ||||| ||||||||||| |||||||||||||||||||||||| || ||||||||    
T  16419297 tcacctcacaagccggttttgtggggttgtattaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgggccacctgctatc 16419395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 2029799 - 2029896
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctat 113  Q
    |||||| |||||  |||||||||||||||| ||||   |||| | ||||| ||||||||||| |||||||||||||||||||||||| || |||||||    
T  2029799 tcacctcacaagccggttttgtggggttgttttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgggccacctgctat 2029896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 15124823 - 15124739
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||||  |||| | ||||| ||||||||||| |||| ||||||||||||||||||  || ||||||||    
T  15124823 ggttttgtggggttgtgttagacccaaccacgatttctaagatggtatcagagtctctccaagatccattggaccacctgctatc 15124739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 36352217 - 36352131
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccat 98  Q
    |||||||||| | |||  ||||||||||||||||||||| |||||| |  |||| |||||||||||||||| |||| ||||||||||    
T  36352217 atcatcacctcaaaagccggttttgtggggttgtgttaggttcaaccacaatttttaagatggtattagagtctcttcaagatccat 36352131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 40379498 - 40379400
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||| ||||||||||||| || || ||||||||    
T  40379498 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctttccaagatccattaggccacctgctatc 40379400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 93667 - 93583
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||||   |||| | ||||| ||||||||||| ||| ||| ||||||||||||||||||| || |||||    
T  93667 ggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagaacctttccaagatccattgggtcacctactatc 93583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 1763299 - 1763370
Alignment:
Q  226 ttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacac 297  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||| ||||   | |||||||||||||||||    
T  1763299 ttttaaccaaaatcaattttacaaaatcaattttatcaaaatcaattctcgtcaccgcacaaccaaacacac 1763370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 7209070 - 7208999
Alignment:
Q  25 aagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatcc 96  Q
    |||| ||||||||| ||||||||||||| || ||| ||||| ||| ||||||||||||||||||||| ||||    
T  7209070 aagtcggttttgtgaggttgtgttagatccatctacgatttctaaaatggtattagagcctctccaaaatcc 7208999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 31700981 - 31700940
Alignment:
Q  61 gatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  31700981 gatttctaagatggtattagagcctctccaagatccattggg 31700940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 13250298 - 13250222
Alignment:
Q  29 tggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtca 105  Q
    |||||||||| || |||||||| | ||| || ||||| ||||||| ||||||||| | |||||||||||||||||||    
T  13250298 tggttttgtgaggatgtgttaggtccaaatacgatttctaagatgatattagagcttttccaagatccattgggtca 13250222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 40149244 - 40149192
Alignment:
Q  62 atttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  40149244 atttctaagatggtatcagagcctcttcaagatccattgggtcacctgctatc 40149192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 5509109 - 5509180
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctct 87  Q
    |||||| ||||| ||||||||||||||||||||||   |||| ||||||| ||| ||||||| |||||||||    
T  5509109 tcacctcacaagctggttttgtggggttgtgttaggcccaaccatgatttctaatatggtatcagagcctct 5509180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 10571000 - 10571066
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagag 82  Q
    ||||||||||||  |||||||||||||||||||||  ||||| | ||||| ||||||||||| ||||    
T  10571000 tcaccttacaagccggttttgtggggttgtgttaggctcaaccacgatttctaagatggtatcagag 10571066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 15461000 - 15461102
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgct 111  Q
    |||||||||| |||||   ||||||||||||||||||||| ||||| || |||| |||||| || | ||| |||||||||| || ||| | ||| |||||    
T  15461000 atcatcacctcacaagacagttttgtggggttgtgttagactcaaccataatttttaagatagtttcagaacctctccaaggtcaattagatcaactgct 15461099  T
Q  112 atc 114  Q
    |||    
T  15461100 atc 15461102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 32596099 - 32596169
Alignment:
Q  224 acttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaaca 294  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||||||||| | ||  ||||||||||||    
T  32596099 acttttaaccaaaatcgattctacataatcaattatatcaaaatcaactctctccattacacaaccaaaca 32596169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 5594057 - 5594145
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtca 105  Q
    |||||| |||||| ||||||| ||| |||||||||  ||||  | ||||| |||||| |||| ||||||||| |||||||||||||||||    
T  5594057 tcacctcacaagtcggttttgcgggattgtgttaggctcaatcacgattt-taagatagtatcagagcctcttcaagatccattgggtca 5594145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 34893505 - 34893541
Alignment:
Q  66 ataagatggtattagagcctctccaagatccattggg 102  Q
    |||||||||||| ||||||||||||||||||||||||    
T  34893505 ataagatggtatcagagcctctccaagatccattggg 34893541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 3853977 - 3854056
Alignment:
Q  224 acttttaaccaaaataaatttta-cataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacactctaa 302  Q
    |||||||| |||||| |||| || || |||||||| ||||||| |||| |||| ||| ||||||||||||||||| ||||    
T  3853977 acttttaatcaaaatcaattctatcaaaatcaattccatcaaactcaattctcgctaccgcacaaccaaacacacactaa 3854056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 5711733 - 5711630
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgc 110  Q
    |||||||||||| |||  |||||||||||||||||||||   |||| |  |||| |||||| |||| ||||||| ||||||||||| ||||  || ||||    
T  5711733 atcatcaccttaaaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatagtatcagagcctcctccaagatccgttggaccacctgc 5711634  T
Q  111 tatc 114  Q
    ||||    
T  5711633 tatc 5711630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 29718358 - 29718445
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggt 103  Q
    |||||| |||||  |||||||||||||||||||||    ||| | ||||| |||| |||||| |||||||||| || |||||||||||    
T  29718358 tcacctcacaagccggttttgtggggttgtgttaggcctaaccacgatttctaagttggtatcagagcctctctaaaatccattgggt 29718445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 12110951 - 12111024
Alignment:
Q  224 acttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacac 297  Q
    ||||||||||||||| ||||| ||| ||||||||  ||||||||||| | ||   | |||||||||||||||||    
T  12110951 acttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaacacac 12111024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 24395909 - 24395978
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||||||||||||||||    ||| | ||||| ||||| ||||| ||||||||| |||||||||||||    
T  24395909 ttttgtggggttgtgttaggccaaaccacgatttctaagagggtatcagagcctcttcaagatccattgg 24395978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 5206728 - 5206820
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatc 107  Q
    |||||||||||||  |||||||| |||||||| ||| ||||  | ||||| ||||||| ||| |||| || || |||||| ||||||||||||    
T  5206728 tcaccttacaagtcagttttgtgaggttgtgtaagactcaatcacgatttctaagatgttatcagagtctccttcaagattcattgggtcatc 5206820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 1946 - 2032
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||||||||   |||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  1946 tcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattggg 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 14329 - 14419
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||||||| |||||  |||||||||||||||||||||   |||| | | ||| ||||||||||| ||||||||||||||||||||||||    
T  14329 atcatcacctcacaagccggttttgtggggttgtgttaggcccaaccacgttttctaagatggtatcagagcctctccaagatccattggg 14419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 5689 - 5783
Alignment:
Q  20 cttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||  ||||||||||||||||||||||  |||| | ||||| ||||||||||| ||||||||| ||| |||||||||| || ||||||||    
T  5689 cttacaagccggttttgtggggttgtgttagacccaaccacgatttctaagatggtatcagagcctcttcaaaatccattgggccacctgctatc 5783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 41244 - 41162
Alignment:
Q  32 ttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||| ||||  ||||||| ||||| ||||||||||| |||||||||||||||| ||||||| || ||||||||    
T  41244 ttttgtggggttgtattaggctcaactacgatttctaagatggtatcagagcctctccaagattcattgggccacctgctatc 41162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 6543001 - 6542899
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgct 111  Q
    |||||||||| | |||  ||||||||||||||||||||||  |||| | |||||  |||||||||| ||||||||| |||||||||||||||||  ||||    
T  6543001 atcatcacctcagaagccggttttgtggggttgtgttagacccaaccacgatttcaaagatggtatcagagcctcttcaagatccattgggtcacttgct 6542902  T
Q  112 atc 114  Q
    |||    
T  6542901 atc 6542899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 7638902 - 7638804
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| ||||| |||||||||| ||||||||||| | |||||||||||| ||||| | ||| ||||| ||||||||||| ||||| ||| ||||||||    
T  7638902 tcacctcacaagctggttttgtgcggttgtgttaggtccaactatgatttctaagaagatatcagagcttctccaagatctattggatcacctgctatc 7638804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 13353231 - 13353317
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||||||||   |||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  13353231 tcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattggg 13353317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 33796356 - 33796442
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    ||||||||||||  |||||||||||||||||||||   |||| |  |||| ||||||||||| ||||||||||||||||||||||||    
T  33796356 tcaccttacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattggg 33796442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 12330233 - 12330135
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  ||||||||| |||||||||||   |||| | ||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||    
T  12330233 tcacctcacaagccggttttgtgaggttgtgttaggcccaaccacgatttctaatatggtatcagagcctctccaagatccattgggccacctgctatc 12330135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 33631845 - 33631761
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||| ||||| | |||| ||||||| ||||||| ||| ||||| ||||||||||| ||||||||| ||| ||||    
T  33631845 ggttttgtggggttgagttaggtccaaccatgatttttaagatgatatcagagcatctccaagatctattgggtcacctgatatc 33631761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 3921603 - 3921686
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||| |||| ||||||| || ||| ||||||| ||| ||||||| ||||||||| ||||||||||||| ||| ||||||||    
T  3921603 gttttgtagggtcgtgttaggtttaaccatgatttctaatatggtatcagagcctcttcaagatccattggatcacctgctatc 3921686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 33494569 - 33494667
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| |  |||| ||||||||||| ||| ||||| | ||||||||||||||| ||||||||    
T  33494569 tcacctcacaagccggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagaacctcttcgagatccattgggtcacctgctatc 33494667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 11085625 - 11085709
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||| ||||||||||| | |||  | ||||| ||||||||| |||||||||||||||||| | ||||| || ||||||||    
T  11085625 ggttttgtgcggttgtgttaggtccaatcacgatttctaagatggttttagagcctctccaagatacgttgggccacctgctatc 11085709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 4868867 - 4868768
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| ||||||| |||||||||||  |||| || ||||||||    
T  4868867 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctccaagatccgctgggccacctgctatc 4868768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 9705046 - 9705129
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagat 94  Q
    |||||||||| |||||| |||||||||||||||||||||   |||| |  |||| ||||||||||| ||||||| |||||||||    
T  9705046 atcatcacctcacaagtcggttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctcctccaagat 9705129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 3680049 - 3680139
Alignment:
Q  23 acaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctat 113  Q
    |||||| | |||||||||||||||||||   |||| |  |||| ||||||||||| ||| ||||||||| |||||| |||||| |||||||    
T  3680049 acaagtcgattttgtggggttgtgttaggcccaaccacaatttctaagatggtatcagaccctctccaaaatccatcgggtcacctgctat 3680139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 27993696 - 27993606
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagag-cctctccaagatccattgggtca 105  Q
    |||||| |||| || |||||||| ||||||||||||| || ||| ||||| ||| ||||||| |||| | ||||||||||||||| |||||    
T  27993696 tcacctcacaacttagttttgtgaggttgtgttagatccatctacgatttttaaaatggtatcagagtcttctccaagatccattaggtca 27993606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 13740720 - 13740800
Alignment:
Q  25 aagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtca 105  Q
    |||| ||||||||| |||||||||||  ||||| | ||||| ||| ||  ||||||||||||| ||||||||||| |||||    
T  13740720 aagtcggttttgtgaggttgtgttaggctcaaccacgatttctaatattatattagagcctctgcaagatccattaggtca 13740800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 13746220 - 13746300
Alignment:
Q  25 aagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtca 105  Q
    |||| ||||||||| |||||||||||  ||||| | ||||| ||| ||  ||||||||||||| ||||||||||| |||||    
T  13746220 aagtcggttttgtgaggttgtgttaggctcaaccacgatttctaatattatattagagcctctgcaagatccattaggtca 13746300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 16540227 - 16540303
Alignment:
Q  220 aattacttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacaca 296  Q
    |||||||| |||||||||| |||| |||||||||||||  ||||||||||| |||| | | |  |||||||||||||    
T  16540227 aattacttctaaccaaaatcaattctacataatcaattctatcaaaatcaattctccccaccatacaaccaaacaca 16540303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 30256622 - 30256694
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||||||||||||||||||   |||| | ||||| |||| |||||| ||||||| ||||| ||||||||||    
T  30256622 ggttttgtggggttgtgttaggcccaaccacgatttctaaggtggtatcagagcctttccaaaatccattggg 30256694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 17147894 - 17147851
Alignment:
Q  71 atggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||    
T  17147894 atggtatcagagcctctccaacatccattgggtcacctgctatc 17147851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 30505587 - 30505630
Alignment:
Q  71 atggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||    
T  30505587 atggtatcagagcctctccaagatgcattgggtcacctgctatc 30505630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 6066005 - 6066039
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttag 50  Q
    |||||| ||||||||||||||||||||||||||||    
T  6066005 tcacctgacaagttggttttgtggggttgtgttag 6066039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 6237737 - 6237676
Alignment:
Q  40 ggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||||||||| ||||  | || || |||||||||||||||| |||| |||||||||||||    
T  6237737 ggttgtgttagactcaatcacgacttctaagatggtattagagtctcttcaagatccattgg 6237676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 24554147 - 24554232
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgg 101  Q
    |||||| |||||  |||||||||| ||||||||||  ||||| || |||| ||| ||||||| ||||  ||| |||||||||||||    
T  24554147 tcacctcacaagccggttttgtggagttgtgttagtctcaaccataatttctaacatggtatcagagtgtcttcaagatccattgg 24554232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 31961023 - 31961071
Alignment:
Q  66 ataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||| ||| ||| |||||||||||||||||||||||| || ||||||||    
T  31961023 ataacatgatatcagagcctctccaagatccattgggccacctgctatc 31961071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 54567922 - 54568020
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| |||||||||||||||||||||| | || ||||||||    
T  54567922 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgagccacctgctatc 54568020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 8142698 - 8142603
Alignment:
Q  19 ccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||| | ||||||||||||||||||||| |  ||| | ||||| ||||||||||| |||||||||  || ||||||| ||||||||||||||    
T  8142698 ccttacaaatcggttttgtggggttgtgttaggtctaaccacgatttctaagatggtatcagagcctctttaaaatccattaggtcatctgctatc 8142603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 21261275 - 21261200
Alignment:
Q  220 aattacttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacac 295  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||  ||| |||||||| ||||||    
T  21261275 aattacttttaaccaaaatcaattctacataatcaattttatcaaaatcaattcttcctaccgcacaactaaacac 21261200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 35038482 - 35038396
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| ||||| ||||||||||||||||||||||   |||| | || || ||||||||||| || |||||||||||||||||||||    
T  35038482 tcacctgacaagctggttttgtggggttgtgttaggcccaaccacgacttctaagatggtatcagtgcctctccaagatccattggg 35038396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 54368546 - 54368632
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattggg 102  Q
    |||||| |||||  |||||| |||||||||||||||  |||| | ||||| ||||||||||| ||||||||| ||||||||||||||    
T  54368546 tcacctcacaagccggttttatggggttgtgttagacccaaccacgatttctaagatggtatcagagcctcttcaagatccattggg 54368632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 4155368 - 4155452
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||||||||||   |||| | ||||| ||||||||||| |||| ||||||||||| ||||||| || ||||||||    
T  4155368 ggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagtctctccaagattcattgggccacctgctatc 4155452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 16926989 - 16926905
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||   ||||| | ||||| ||||||||||| |||| |||| ||||||||||||||||| ||| ||||    
T  16926989 ggttttgtggggttgtgttaagctcaaccacgatttctaagatggtatcagagtctcttcaagatccattgggtcacctgttatc 16926905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 49629649 - 49629733
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||||  ||| ||  |||| ||| ||||||||||||||||| |||||||||||||  || ||||||||    
T  49629649 ggttttgtggggttgtgttagacccaattaccatttttaaaatggtattagagcctcttcaagatccattggaccacctgctatc 49629733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 20327903 - 20327805
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  |||||||||||||||||||||   |||| ||||||| ||| ||||||| || ||||||| || |||||||||| || ||||||||    
T  20327903 tcacctcacaagccggttttgtggggttgtgttaggcccaaccatgatttctaatatggtatcagtgcctctctaaaatccattgggccacctgctatc 20327805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 46139344 - 46139390
Alignment:
Q  68 aagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  46139344 aagatggtattagatcctctccaagatccattgggtcacctgctatc 46139390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 20303425 - 20303341
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||| | |||| |  |||| ||| ||||||| |||||||||| || |||||||||| || ||||||||    
T  20303425 ggttttgtggggttgtgttaggtccaaccacaatttctaatatggtatcagagcctctctaaaatccattgggccacctgctatc 20303341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 19954456 - 19954408
Alignment:
Q  66 ataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||| ||||||| ||||||||| |||||||||||||| |||||||||||    
T  19954456 ataacatggtatcagagcctcttcaagatccattgggccatctgctatc 19954408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 27086624 - 27086680
Alignment:
Q  20 cttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggta 76  Q
    |||||||||||||||||||| ||||||||||   |||| ||||||| ||||||||||    
T  27086624 cttacaagttggttttgtggagttgtgttaggcccaaccatgatttctaagatggta 27086680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 45828049 - 45828133
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattg 100  Q
    |||||| |||||  ||||||||| |||||||||||   | || |  |||| ||||||||||| ||||||||||||||||||||||    
T  45828049 tcacctcacaagccggttttgtgaggttgtgttaggccctaccacaatttctaagatggtatcagagcctctccaagatccattg 45828133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 1723130 - 1723059
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctct 87  Q
    |||||| |||||  |||||||||||||||||||||   |||| | ||||| ||||||||||| |||||||||    
T  1723130 tcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctct 1723059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 16239621 - 16239720
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct-ctccaagatccattgggtcatctgctatc 114  Q
    |||||| |||||  ||||||||||| |||||||||   |||| | ||||| ||||||||||| ||||||| ||||||||||| || || || ||||||||    
T  16239621 tcacctcacaagccggttttgtgggattgtgttaggcccaaccacgatttctaagatggtatcagagcctcctccaagatccgtttggccacctgctatc 16239720  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 26272378 - 26272283
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgct 111  Q
    |||||| ||||| || ||||||||||||||||||||  |||| |  |||| ||||||| ||| | ||| ||| ||| |||||||||| ||||||||    
T  26272378 tcacctcacaagctgattttgtggggttgtgttagacccaaccacaatttctaagatgatatcaaagcatcttcaatatccattgggccatctgct 26272283  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 7697456 - 7697418
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttag 50  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  7697456 atcatcacctcacaagctggttttgtggggttgtgttag 7697418  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 45139025 - 45138955
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctc 86  Q
    |||||| |||||  |||||||||||||||||| |||  |||| | ||||| ||||||||||| ||||||||    
T  45139025 tcacctcacaagccggttttgtggggttgtgtaagacccaaccacgatttctaagatggtatcagagcctc 45138955  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 17638264 - 17638333
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcct 85  Q
    |||||| ||||| |||||||| |||||||||||||   |||| | ||||| ||||||||||| |||||||    
T  17638264 tcacctcacaagctggttttgaggggttgtgttaggcccaaccacgatttctaagatggtataagagcct 17638333  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 37246907 - 37246846
Alignment:
Q  16 tcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtat 77  Q
    |||||| |||| | || ||||||| ||||||||||| ||||| ||||||| |||||||||||    
T  37246907 tcacctcacaaatcggatttgtggagttgtgttagactcaacaatgatttttaagatggtat 37246846  T

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Target: scaffold0692 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 5794 - 5710
Alignment:
Q  30 ggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||| |||||||||||||   |||| | ||||| ||||||||||| |||||||||||||||||||||| | || ||||||||    
T  5794 ggttttgcggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgagccacctgctatc 5710  T

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Target: scaffold0400 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 3890 - 3973
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||   |||| |  |||| ||| ||||||| ||| ||||||||||||||| |||| || ||||||||    
T  3890 gttttgtggggttgtgttaggcacaaccacaatttctaatatggtatcagatcctctccaagatccactgggccacctgctatc 3973  T

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Target: scaffold0365 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 4534 - 4617
Alignment:
Q  31 gttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    ||||||||||||||||||||   |||| |  |||| ||| ||||||| ||| ||||||||||||||| |||| || ||||||||    
T  4534 gttttgtggggttgtgttaggcacaaccacaatttctaatatggtatcagatcctctccaagatccactgggccacctgctatc 4617  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 56485 - 56560
Alignment:
Q  12 atcatcaccttacaagttggttttgtggggttgtgttagattcaactatgatttataagatggtattagagcctct 87  Q
    |||||||||| |||||  |||||||||||||||||||||   |||| | ||||| ||| ||||||| |||||||||    
T  56485 atcatcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaatatggtatcagagcctct 56560  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 31949 - 31999
Alignment:
Q  220 aattacttttaaccaaaataaattttacataatcaatttcatcaaaatcaa 270  Q
    |||||||| |||||||||| |||| |||||||||||||  |||||||||||    
T  31949 aattacttctaaccaaaatcaattctacataatcaattctatcaaaatcaa 31999  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 51355 - 51401
Alignment:
Q  68 aagatggtattagagcctctccaagatccattgggtcatctgctatc 114  Q
    |||||||||| ||||| ||||||||||||||||||||  ||||||||    
T  51355 aagatggtatcagagcttctccaagatccattgggtctcctgctatc 51401  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 15290 - 15217
Alignment:
Q  224 acttttaaccaaaataaattttacataatcaatttcatcaaaatcaactctcactatcgcacaaccaaacacac 297  Q
    ||||||||||||||| ||||| ||| ||||||||  ||||||||||| | ||   | |||||||||||||||||    
T  15290 acttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaaccaaacacac 15217  T

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