View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13083_high_7 (Length: 285)
Name: NF13083_high_7
Description: NF13083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13083_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 46818881 - 46818630
Alignment:
| Q |
16 |
caattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtgtggtggaaagtttatgatactatgccaaaacatttgcaatcatat |
115 |
Q |
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| T |
46818881 |
caattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtatggtggaaagtttatgatactatgccaaaacatttgcaatcatat |
46818782 |
T |
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| Q |
116 |
tgttcccttacaaagcaatcaaatgaaagaattgtcaagaatagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaagg |
215 |
Q |
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| T |
46818781 |
tgttcccttacaaagcaatcaaatgaaagaattgtcaagaatagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaagg |
46818682 |
T |
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| Q |
216 |
atcctagaaggttgaactacatagattagattataatattatggtgtacaag |
267 |
Q |
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| T |
46818681 |
atcctagaaggttgaactacatagattagattataataacatggtgtacaag |
46818630 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 36882892 - 36882960
Alignment:
| Q |
157 |
tagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaag |
225 |
Q |
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| T |
36882892 |
tagaaaaagagcaagaaatgctaatttgagtgatgggcattggaagattaaggttaaggatcctagaag |
36882960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 36882804 - 36882853
Alignment:
| Q |
69 |
tgtggtggaaagtttatgatactatgccaaaacatttgcaatcatattgt |
118 |
Q |
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| T |
36882804 |
tgtggtggaaggtttatgatactatgccacaaaagttgcaagcatattgt |
36882853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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