View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13083_low_3 (Length: 564)
Name: NF13083_low_3
Description: NF13083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13083_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 27844020 - 27844457
Alignment:
| Q |
17 |
tcatcttcatattgtagatggctcac-------caatacctttgagtcatgtatatgatacccataaaatatcccaactgcacttcaatatccaataaac |
109 |
Q |
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| T |
27844020 |
tcatcttcatattgtagatggctcaccattcaccaatacctttgagtcatgtatctgatacccataaaatatcccaactgcaccacaatatccaataaac |
27844119 |
T |
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| Q |
110 |
ccctgacttcttttccagacttccaccaataaaacaaaagggtgctaacagatcaccttgcataagcccgctactaattttcatctcttccatgggaatc |
209 |
Q |
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| T |
27844120 |
ccctgacctctcttccagacttccaccaataaaacaaaagggtactaacagatcaccttgcataagcccgctactaattttcatctcttccatgggaatc |
27844219 |
T |
|
| Q |
210 |
ccattcgccaataccaacaaattatccgaaaatacagaagccctcatccaacctcttcatttttcattgaagttgaatctttaaagcatgtaatcccaaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27844220 |
ccattcgccaataccaacaaattatccgaaaatacagaagccctcatccaacctcttcatttttcatcgaagttgaatctttaaagcatgtaatcccaaa |
27844319 |
T |
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| Q |
310 |
aactccaacttaccaaatcgtaggctttctgaaattccaccgtagagatcatgcactcctttttagtgtctttgaaaggatcattctatttcatcaattt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27844320 |
aactccaacttaccaaatcgtaggctttctgaaattccaccgtagagatcatgcactcctttttagtctctttgaaaggatcattctatttcatcaattt |
27844419 |
T |
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| Q |
410 |
catttttgtatactcatcctcatggctgtttagaaata |
447 |
Q |
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||||||||||||||||||||||| ||| | |||||||| |
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| T |
27844420 |
catttttgtatactcatcctcatagctatatagaaata |
27844457 |
T |
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