View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13084_high_3 (Length: 318)
Name: NF13084_high_3
Description: NF13084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13084_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 3948252 - 3948539
Alignment:
| Q |
13 |
aatatgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctcatat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948252 |
aatatgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctcatat |
3948351 |
T |
|
| Q |
113 |
ttatttgaaggagcaagtaaaagagaatgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattatttgga |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3948352 |
ttatttgaaggagcaagtaaaagaaaatgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattgtttgga |
3948451 |
T |
|
| Q |
213 |
tgtcaaagaaagcttgaaaccctacatttaggatactgtttcttgaaaattttccttcatgttttaagaatatgatataaggctacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3948452 |
tgtcaaagaaagcttgaaaccctacatttaggatactgtttcatgaaaattttcctttatgttttaagaatatgatataaggctacaa |
3948539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 289
Target Start/End: Complemental strand, 3804611 - 3804433
Alignment:
| Q |
111 |
atttatttgaaggagcaagtaaaagagaatgtgacatcggagaaaatgacagtactggatttacg-atacacacaagttaatgtaatgcctgcattattt |
209 |
Q |
| |
|
||||| |||||||| ||||||| |||||| |||||||| ||||||||||||| ||| |||||||| |||||||| ||| ||||| |||||||||| ||| |
|
|
| T |
3804611 |
atttacttgaaggatcaagtaagagagaacgtgacatcagagaaaatgacagaactagatttacggatacacactagtcaatgttttgcctgcattgttt |
3804512 |
T |
|
| Q |
210 |
ggatgtcaaagaaagcttgaaaccctacatttaggatactgtttcttgaaaattttccttcatgttttaagaatatgata |
289 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
3804511 |
ggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcatgaaaattttccttcatg-tttaagaatctgata |
3804433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 283
Target Start/End: Complemental strand, 4016932 - 4016788
Alignment:
| Q |
140 |
tgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattatttggatgtcaaagaaagcttgaaaccctacat |
239 |
Q |
| |
|
||||||||| | ||| ||||||| ||||||||||||||||| ||||| ||| | ||||||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
4016932 |
tgtgacatcagtgaatatgacagagctggatttacgatacactcaagtgaatacattgcctgcatcatttggatgtcaaagcaagcttgaaatcctacat |
4016833 |
T |
|
| Q |
240 |
ttaggatactgtttc-ttgaaaattttccttcatgttttaagaat |
283 |
Q |
| |
|
|||||| | |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
4016832 |
ttaggaaattgttccattgaaaattttccttcatgttttaagaat |
4016788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 4019416 - 4019503
Alignment:
| Q |
17 |
tgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatcta |
104 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4019416 |
tgcaccttggtggagctatacactctttgatgttcaacaaatgcattttcataactcttcatttgatatcttacatctgcaggatcta |
4019503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 3805693 - 3805779
Alignment:
| Q |
19 |
caccttggtggagctatacattct-ttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatcta |
104 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3805693 |
caccttgatggagttatacattcccttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatcta |
3805779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 289
Target Start/End: Original strand, 3965381 - 3965531
Alignment:
| Q |
140 |
tgtgacatcggagaaaatgacagtactggatttacgatacacacaagttaatgtaatgcctgcattatttggatgtcaaagaaagcttgaaaccctacat |
239 |
Q |
| |
|
||||||||| ||||| |||| || ||||||||| |||||||||| | |||| | ||||||||| ||||||| |||||| |||||||||| ||||||| |
|
|
| T |
3965381 |
tgtgacatcagagaatatgatagagttggatttacaatacacacaaatcaatgcattgcctgcatcatttggacgtcaaaccaagcttgaaatcctacat |
3965480 |
T |
|
| Q |
240 |
ttaggatactgtttc-ttgaaaattttccttcatgttttaagaatatgata |
289 |
Q |
| |
|
|||||| |||||| | |||||| ||||||||||||||||||||| ||||| |
|
|
| T |
3965481 |
ttaggaaactgttccattgaaagatttccttcatgttttaagaatttgata |
3965531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3962659 - 3962569
Alignment:
| Q |
17 |
tgcaccttggtggagctatacattctttggtattcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacct |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||| |
|
|
| T |
3962659 |
tgcaccttggtggagctataccctctttggagttcaacaaatgcattatcataactcttgttttgatatcttacatctgtaggatctacct |
3962569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 4220677 - 4220733
Alignment:
| Q |
52 |
aacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctc |
108 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| ||||| || |||||||||||| |
|
|
| T |
4220677 |
aacaaatgcattttcataactcttcttttgatatcgtacatttgtaggatctacctc |
4220733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 4011651 - 4011713
Alignment:
| Q |
49 |
ttcaacaaatgcattttcataacccttcatttgatatcttacatctgcaggatctacctcata |
111 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| || ||||| || |||||||||| |||| |
|
|
| T |
4011651 |
ttcagcaaatgcattttcataactcttcttttgatgtcgtacatttgtaggatctaccccata |
4011713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 3811870 - 3811919
Alignment:
| Q |
56 |
aatgcattttcataacccttcatttgatatcttacatctgcaggatctac |
105 |
Q |
| |
|
|||||||||||||||| |||| |||||| || |||||||| ||||||||| |
|
|
| T |
3811870 |
aatgcattttcataactcttcttttgatgtcgtacatctgtaggatctac |
3811919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 13399013 - 13399057
Alignment:
| Q |
49 |
ttcaacaaatgcattttcataacccttcatttgatatcttacatc |
93 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| || |||||| |
|
|
| T |
13399013 |
ttcaacaaatgcattttcataactcttcttttgatgtcgtacatc |
13399057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University