View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13084_high_6 (Length: 265)
Name: NF13084_high_6
Description: NF13084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13084_high_6 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 232671 - 232428
Alignment:
| Q |
9 |
gacatcatcagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaan |
108 |
Q |
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| T |
232671 |
gacatcattagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaaa |
232572 |
T |
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| Q |
109 |
nnnnnnnagatctgatggataatcacaattgtcgctagtttgcagaaatcaacaatggcatcaaattaggtgctacatagtgtggacattaagtatcacc |
208 |
Q |
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| T |
232571 |
aatttctagatcagatggataaccacaattgtcgctagtctgcataaatcaacaatggcatcaaattaggtgctacatagtgtggacatttagtatcacc |
232472 |
T |
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| Q |
209 |
tgactgggtgcatcaatcagatcatatacactcctgccaacata |
252 |
Q |
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| T |
232471 |
tgactgggtgcatcaatcagatcatgtacactcctgccaacata |
232428 |
T |
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Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 14584704 - 14584947
Alignment:
| Q |
9 |
gacatcatcagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaan |
108 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14584704 |
gacatcattagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaaa |
14584803 |
T |
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| Q |
109 |
nnnnnnnagatctgatggataatcacaattgtcgctagtttgcagaaatcaacaatggcatcaaattaggtgctacatagtgtggacattaagtatcacc |
208 |
Q |
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| T |
14584804 |
aatttctagatcagatggataaccacaattgtcgctagtctgcataaatcaacaatggcatcaaattaggtgctacatagtgtggacatttagtatcacc |
14584903 |
T |
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| Q |
209 |
tgactgggtgcatcaatcagatcatatacactcctgccaacata |
252 |
Q |
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| T |
14584904 |
tgactgggtgcatcaatcagatcatgtacactcctgccaacata |
14584947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 49825263 - 49825356
Alignment:
| Q |
13 |
tcatcagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaa |
107 |
Q |
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||||||| ||||||||||||| ||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
49825263 |
tcatcagatgtccttttgacagcatagttgcgccaat-tatgcattaagttcccatccgtaatttcaaccttaaatagcatttgttttccaacaa |
49825356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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