View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13084_low_1 (Length: 543)
Name: NF13084_low_1
Description: NF13084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13084_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Complemental strand, 46688443 - 46687925
Alignment:
| Q |
7 |
gaaagcaggccttatacttagatatgattaatctccaagacattcttattgatttgcatgagtatatgatctttcccgttgtatgtgtgcatgtaacttt |
106 |
Q |
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| T |
46688443 |
gaaagcaggccttatccttagatatgattaatctccaagacattcttattgatttgcatgagtatatgatctttcccgttgtatgtgtgcatgtaacttt |
46688344 |
T |
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| Q |
107 |
cccttgctccaagacattcttattaatgcatggcaatatgcaggatgattatttgtttcacctcctcatcaccagtctactctacgttgagaagcttgtc |
206 |
Q |
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| T |
46688343 |
cccttgctccaagacattcttattaatgcatggcaatatgcaggatgattatttgtttcacctcctcatcaccagtctactctacgttgagaagcttgtc |
46688244 |
T |
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| Q |
207 |
gatatccatgaattgcttggccatgaacaagacagctctaggaaggactcggttgaaggtgaaaggaaacctgaagtttcgtctcaggatataaataaag |
306 |
Q |
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| T |
46688243 |
gatatccatgaattgcttggccatgaacaagacagctctaggaaggactcggttgaaggtgaaaggaaacctgaagtttcgtctcaggatataaataaag |
46688144 |
T |
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| Q |
307 |
ttaattcaaatgaagaagctcctacagattcaactcatgcatggattggcacaagcgagctacctgatcctcaaatctcaattgatgatattaactatgc |
406 |
Q |
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| T |
46688143 |
ttaattcaaatgaagaagctcctacagattcaactcatgcatggattgacacaagcaagctacctgatcctcaaatctcaattgatgatattaactatgc |
46688044 |
T |
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| Q |
407 |
tcttggattacttgactgatcaaaaccaattgagggtgcaacaattcttcgggaagataatcacactcacgacaattttgcccatattcctttaatggat |
506 |
Q |
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| T |
46688043 |
tcttggattacttgacggatcagaaccaattgagggtgcaacaaatattcgggaagataatcaaacacaggacaatcttgcccatgttgctttaatggat |
46687944 |
T |
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| Q |
507 |
aacaatccatttcagagag |
525 |
Q |
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| T |
46687943 |
aacaatccatttaagagag |
46687925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 46705266 - 46705189
Alignment:
| Q |
317 |
tgaagaagctcctacagattcaactcatgcatggattggcacaagcgagctacctgatcctcaaatctcaattgatga |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||| |||||| |
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| T |
46705266 |
tgaagaagctcctacagattcaactcatgcatggattgacacaagtcagctacatgatcctgaaatctcaagtgatga |
46705189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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