View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13084_low_10 (Length: 207)

Name: NF13084_low_10
Description: NF13084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13084_low_10
NF13084_low_10
[»] chr5 (8 HSPs)
chr5 (19-188)||(10217782-10217951)
chr5 (20-188)||(10610714-10610882)
chr5 (20-160)||(10748052-10748192)
chr5 (20-147)||(10717935-10718062)
chr5 (20-148)||(7192049-7192177)
chr5 (29-147)||(10764178-10764296)
chr5 (93-150)||(10564069-10564126)
chr5 (16-136)||(19606898-19607018)
[»] chr6 (5 HSPs)
chr6 (19-188)||(12931283-12931452)
chr6 (19-151)||(12898611-12898743)
chr6 (19-151)||(12906231-12906363)
chr6 (23-151)||(12957122-12957250)
chr6 (52-151)||(12947685-12947784)
[»] chr2 (1 HSPs)
chr2 (19-188)||(17924439-17924608)
[»] chr3 (1 HSPs)
chr3 (102-137)||(31468281-31468316)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 10217782 - 10217951
Alignment:
Q  19 attgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  10217782 attgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagctagatttagatattgtagatgttggcagtttcctatgc 10217881  T
Q  119 ttggaggaatatttccttcaaacatattatgatgtaaatccagccaatacaattggctgaaattgcctat 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217882 ttggaggaatacttccttcaaacatattatgatgtaaatccagccaatacaattggctgaaattgcctat 10217951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 10610882 - 10610714
Alignment:
Q  20 ttgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgct 119  Q
    |||||||  |||||||||||||||||||||| ||||||  ||| ||||| ||||| |||| ||||| ||| |||||||| | ||| || |||||||||||    
T  10610882 ttgataaataaaaaagattaaaaatctctaaaggtatggatccactaagtttattatgagaaagatctaggtattgtaacttttgacaatttcctatgct 10610783  T
Q  120 tggaggaatatttccttcaaacatattatgatgtaaatccagccaatacaattggctgaaattgcctat 188  Q
    ||||||||||||||||| |||||| |||   |||| | ||| || | ||||||| |||| |||||||||    
T  10610782 tggaggaatatttccttgaaacatgttactgtgtacagccaacctaaacaattgactgagattgcctat 10610714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 10748052 - 10748192
Alignment:
Q  20 ttgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgct 119  Q
    ||||||| ||||||| || |||||||||| | |||||| |||| ||||||||||| |||| ||||| ||| |||||||| | ||| || ||| |||||||    
T  10748052 ttgataaagaaaaaatatgaaaaatctctgaaggtatggttccactaagcttattatgagaaagatctaggtattgtaacttttgacaattttctatgct 10748151  T
Q  120 tggaggaatatttccttcaaacatattatgatgtaaatcca 160  Q
    |||||||||||||||||  ||||||||| ||| ||||||||    
T  10748152 tggaggaatatttccttggaacatattacgatataaatcca 10748192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 10717935 - 10718062
Alignment:
Q  20 ttgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgct 119  Q
    |||||||  ||||||||||||||| |||||  |||||| |||| |||| | |||| |||| ||||| |||||||||||||| ||| ||||||||||| ||    
T  10717935 ttgataaataaaaaagattaaaaacctctacaggtatggttccactaaacctattatgagaaagatctagatattgtaaattttgacagtttcctatact 10718034  T
Q  120 tggaggaatatttccttcaaacatatta 147  Q
    |||||||||||| |||| ||||||||||    
T  10718035 tggaggaatattcccttgaaacatatta 10718062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 7192177 - 7192049
Alignment:
Q  20 ttgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgct 119  Q
    ||||||| ||| ||||| | ||||  |||||||||||| |||||||||| || ||||| ||||| |  || |||||||| | || |||||||||||| ||    
T  7192177 ttgataacgaagaaagactgaaaacttctaagggtatggttcctctaagattgttttgtgcaaggtccaggtattgtaactttttgcagtttcctatact 7192078  T
Q  120 tggaggaatatttccttcaaacatattat 148  Q
    ||  |||||||||||||| ||||||||||    
T  7192077 tgacggaatatttccttctaacatattat 7192049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 10764178 - 10764296
Alignment:
Q  29 aaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgcttggaggaat 128  Q
    |||||| || ||||| |||||  |||||| |||| |||||||| || | || |||||  ||||||||||| | ||| |||||||||||||| ||||||||    
T  10764178 aaaaaatatgaaaaacctctacaggtatggttccgctaagcttgttatcagaaagatcgagatattgtaacttttgacagtttcctatgctaggaggaat 10764277  T
Q  129 atttccttcaaacatatta 147  Q
    |||||| | ||||||||||    
T  10764278 atttccgtgaaacatatta 10764296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 10564126 - 10564069
Alignment:
Q  93 ttgtaaatgttggcagtttcctatgcttggaggaatatttccttcaaacatattatga 150  Q
    |||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  10564126 ttgtaaattttgacaatttcctatgctaggaggaatatttccttcaaacatattatga 10564069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 19606898 - 19607018
Alignment:
Q  16 aatattgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttccta 115  Q
    ||||||||||| ||  |||||  ||||| ||||||||||||| |||| ||||| |||||||||  |||   ||   ||||||| | ||| ||||||||||    
T  19606898 aatattgataaagaggaaagacgaaaaacctctaagggtatggttccactaagattattttgaaaaaggactatggattgtaacttttgacagtttccta 19606997  T
Q  116 tgcttggaggaatatttcctt 136  Q
    |||||| ||||||||||||||    
T  19606998 tgcttgaaggaatatttcctt 19607018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 12931452 - 12931283
Alignment:
Q  19 attgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgc 118  Q
    |||||||| ||||||||||| |||| |||||  |||||| |||||||||||||||| |||| |||||  ||| ||||||||| ||| |||||||||||||    
T  12931452 attgataaagaaaaaagatttaaaacctctacaggtatggttcctctaagcttattatgagaaagatcaagagattgtaaattttgacagtttcctatgc 12931353  T
Q  119 ttggaggaatatttccttcaaacatattatgatgtaaatccagccaatacaattggctgaaattgcctat 188  Q
    ||||||||||| |||||| |||||||||||||| ||| || |   |||||||||| |||| |||||||||    
T  12931352 ttggaggaatacttccttgaaacatattatgatttaattctaaataatacaattgactgagattgcctat 12931283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 12898743 - 12898611
Alignment:
Q  19 attgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgc 118  Q
    |||||||| ||||||||||| |||| ||||   |||||| |||||||||||||||| |||| ||||| |||||||||||||||| | |||||||| ||||    
T  12898743 attgataaagaaaaaagatttaaaacctctgcaggtatggttcctctaagcttattatgagaaagatctagatattgtaaatgtagacagtttccaatgc 12898644  T
Q  119 ttggaggaatatttccttcaaacatattatgat 151  Q
    ||||||||||| |||||| ||||||||||||||    
T  12898643 ttggaggaatacttccttgaaacatattatgat 12898611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 12906363 - 12906231
Alignment:
Q  19 attgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgc 118  Q
    |||||||| ||||| ||||| |||| |||||  |||||| |||||||||||||||| ||||  |||| |||||||||||||| ||| |||||||||| ||    
T  12906363 attgataaagaaaacagatttaaaacctctacaggtatggttcctctaagcttattatgagacagatctagatattgtaaattttgacagtttcctaagc 12906264  T
Q  119 ttggaggaatatttccttcaaacatattatgat 151  Q
    ||||||||||| |||||| ||||||||||||||    
T  12906263 ttggaggaataattccttgaaacatattatgat 12906231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 12957250 - 12957122
Alignment:
Q  23 ataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgcttgg 122  Q
    |||| ||||||| ||| |||| |||||  |||||| |||||||||||||||| |||  |||||||||||||||||||| ||| |||||||||||||||||    
T  12957250 ataatgaaaaaatatttaaaacctctacaggtatggttcctctaagcttattatgataaagatttagatattgtaaattttgacagtttcctatgcttgg 12957151  T
Q  123 aggaatatttccttcaaacatattatgat 151  Q
    ||||||| |||||| |||||| |||||||    
T  12957150 aggaatacttccttgaaacatgttatgat 12957122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 12947784 - 12947685
Alignment:
Q  52 ggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgcttggaggaatatttccttcaaacatattatgat 151  Q
    |||||| |||||||||||||||| |||| |||||  ||| ||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||||||    
T  12947784 ggtatggttcctctaagcttattatgagaaagataaagagattgtaaattttgacagtttcctatgcttggaggaatacttccttgaaacatattatgat 12947685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 17924439 - 17924608
Alignment:
Q  19 attgataaggaaaaaagattaaaaatctctaagggtatgattcctctaagcttattttgagcaagatttagatattgtaaatgttggcagtttcctatgc 118  Q
    |||||||| ||||||||||| |||| |||||  |||||| |||||||||||||||| ||||  |||| |||||||||||||| ||| |||||||||| ||    
T  17924439 attgataaagaaaaaagatttaaaacctctacaggtatggttcctctaagcttattatgagacagatctagatattgtaaattttgacagtttcctaagc 17924538  T
Q  119 ttggaggaatatttccttcaaacatattatgatgtaaatccagccaatacaattggctgaaattgcctat 188  Q
    ||||||||||| |||||| |||||||||||||| ||| || |    ||||||||| |||| |||||||||    
T  17924539 ttggaggaataattccttgaaacatattatgatctaattctaaatcatacaattgactgagattgcctat 17924608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 31468281 - 31468316
Alignment:
Q  102 ttggcagtttcctatgcttggaggaatatttccttc 137  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31468281 ttggcagtttcctatgcttagaggaatatttccttc 31468316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University