View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13084_low_2 (Length: 512)
Name: NF13084_low_2
Description: NF13084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13084_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 498
Target Start/End: Complemental strand, 49670143 - 49669662
Alignment:
| Q |
17 |
gatacggtttcctgttataatagatatcgtaggaatgggaagaacatttgtgtttaaaatagtgtgcaggaggattggtattatggctgtgattgcatag |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||| | || |||||| ||||||||||| |||||||||| |
|
|
| T |
49670143 |
gatatggtttcctgttataatagatatcgtaggaaaaggaagtacagttgtgtttaaaatactgttctggtggattgatattatggctgcgattgcatag |
49670044 |
T |
|
| Q |
117 |
gaaaagagttacattataatgtatataaaaagaaatcaaaggagaaggagaaggaagagtgtaattttggttcaaagtattacaaacattatcttgcaaa |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||| |||| |||||||||||||| |
|
|
| T |
49670043 |
gaaaagagttacattataatttatataaaaagaaacaaaaggagaagggggaggaagagtgtaattgtggttcaaagtatcacaagcattatcttgcaaa |
49669944 |
T |
|
| Q |
217 |
cgtttgtaaaattcttgatcagaaagtgtaatggtattgtggtcaatgacaccagttagctcaannnnnnnngcattcttctccagttgaatcattttgg |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
49669943 |
cgtttgtaaaaatcttgatcagaaagtgtaatggtactctggtcaacgacaccagttagctcaattggttttgcattcttgtccagttggatcattttgg |
49669844 |
T |
|
| Q |
317 |
gtgaataataggtgtcgtcacagccatgtatgagtatggagccacagtctggttgttctgccttggtgaaaggataacggaaaatcccacgagctccaca |
416 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
49669843 |
gtgaataataactgtcatcacagccacgtatgagtatggagccacagtctggttgttctgccttggtgaaagggtaatggaaaatcccacgagctccaca |
49669744 |
T |
|
| Q |
417 |
actgaatgagtgtggacagttatattggtccccacttccataccttgctgataaaatcaacacgaggggacaatacatgagg |
498 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
49669743 |
actgaatgagtgtggacagttatattggttcccatttccataccttgctgataaaatcaacacaaggagacaatacaagagg |
49669662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University