View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13084_low_3 (Length: 469)

Name: NF13084_low_3
Description: NF13084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13084_low_3
NF13084_low_3
[»] chr2 (9 HSPs)
chr2 (11-305)||(4939210-4939504)
chr2 (11-305)||(5024300-5024594)
chr2 (320-451)||(4941673-4941804)
chr2 (320-451)||(5026753-5026884)
chr2 (303-437)||(16157821-16157955)
chr2 (352-418)||(28018617-28018683)
chr2 (352-418)||(20482504-20482570)
chr2 (69-150)||(21807636-21807717)
chr2 (105-168)||(23682248-23682311)
[»] chr1 (6 HSPs)
chr1 (234-427)||(26214899-26215092)
chr1 (285-424)||(9802608-9802747)
chr1 (282-427)||(6532061-6532205)
chr1 (352-421)||(49639865-49639934)
chr1 (102-175)||(37737425-37737498)
chr1 (111-178)||(9802434-9802501)
[»] chr3 (4 HSPs)
chr3 (312-424)||(23374177-23374289)
chr3 (352-421)||(53979365-53979434)
chr3 (352-424)||(31193957-31194029)
chr3 (352-424)||(52774284-52774356)
[»] chr6 (5 HSPs)
chr6 (12-427)||(31273428-31273841)
chr6 (352-418)||(6343588-6343654)
chr6 (352-424)||(26134696-26134768)
chr6 (354-388)||(6568525-6568559)
chr6 (352-429)||(28561296-28561373)
[»] chr8 (4 HSPs)
chr8 (352-421)||(15194347-15194416)
chr8 (275-424)||(18551355-18551504)
chr8 (354-425)||(15886233-15886304)
chr8 (354-418)||(44230396-44230460)
[»] chr5 (5 HSPs)
chr5 (53-175)||(23884047-23884169)
chr5 (352-426)||(36731534-36731608)
chr5 (352-418)||(16989669-16989735)
chr5 (74-175)||(20322631-20322732)
chr5 (80-148)||(26465351-26465419)
[»] scaffold0164 (1 HSPs)
scaffold0164 (352-421)||(25938-26007)
[»] chr4 (5 HSPs)
chr4 (352-421)||(18255214-18255283)
chr4 (352-424)||(13989234-13989306)
chr4 (354-429)||(23166289-23166364)
chr4 (372-426)||(22644738-22644792)
chr4 (69-150)||(16988237-16988318)
[»] chr7 (3 HSPs)
chr7 (102-175)||(3004924-3004997)
chr7 (352-424)||(16257774-16257846)
chr7 (352-424)||(19813566-19813638)
[»] scaffold0014 (1 HSPs)
scaffold0014 (352-424)||(94611-94683)
[»] scaffold1416 (1 HSPs)
scaffold1416 (352-418)||(77-143)
[»] scaffold0015 (1 HSPs)
scaffold0015 (354-421)||(23283-23350)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 4939210 - 4939504
Alignment:
Q  11 cacagatggatcagaaggtgtggaaataggtttcgaataagtaagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccc 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4939210 cacagatggatcagaaggtgtggaaataggtttggaataagtaagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccc 4939309  T
Q  111 tgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaaggaagcatgcaagatagacttgacattagtaaact 210  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4939310 tgttgagaatgagccacctctaaaccaagataatattttagttgtcctagatctttgattttgaaggaagcatgcaagatagacttgacattcgtaaact 4939409  T
Q  211 catacatatagttaccaccatggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtaatct 305  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4939410 catacatagagttaccagcaaggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtgatct 4939504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 5024300 - 5024594
Alignment:
Q  11 cacagatggatcagaaggtgtggaaataggtttcgaataagtaagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccc 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5024300 cacagatggatcagaaggtgtggaaataggtttggaataagtaagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccc 5024399  T
Q  111 tgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaaggaagcatgcaagatagacttgacattagtaaact 210  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5024400 tgttgagaatgagccacctctaaaccaagataatattttagttgtcctagatctttgattttgaaggaagcatgcaagatagacttgacattcgtaaact 5024499  T
Q  211 catacatatagttaccaccatggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtaatct 305  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5024500 catacatagagttaccagcaaggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtgatct 5024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 4941673 - 4941804
Alignment:
Q  320 atagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 419  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941673 atagccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 4941772  T
Q  420 ggtttagaagctttaattcctgaaggtaattg 451  Q
    ||||||||| ||||||||||||||||||||||    
T  4941773 ggtttagaatctttaattcctgaaggtaattg 4941804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 5026753 - 5026884
Alignment:
Q  320 atagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 419  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5026753 atagccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatta 5026852  T
Q  420 ggtttagaagctttaattcctgaaggtaattg 451  Q
    ||||||||| ||||||||||||||||||||||    
T  5026853 ggtttagaatctttaattcctgaaggtaattg 5026884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 303 - 437
Target Start/End: Complemental strand, 16157955 - 16157821
Alignment:
Q  303 tctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatca 402  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  16157955 tctgaatttgcatgcttatatccttgagccagtaataaagcagcgagcctttcataccattttctactggcctgctttaaaccatagagagattttacca 16157856  T
Q  403 atttgcaaacttgattaggtttagaagctttaatt 437  Q
    |||| |||||| |||||||||||||||||| ||||    
T  16157855 atttacaaactcgattaggtttagaagcttcaatt 16157821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 28018683 - 28018617
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 418  Q
    ||||||||||||||||||| |||||||| |  ||||||||||||||   ||||||||||||||||||    
T  28018683 tttcataccattttctactagcctgcttgaggccatagagagatttggacaatttgcaaacttgatt 28018617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 20482504 - 20482570
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 418  Q
    ||||||||||||||||||| || ||||| |  ||||||||||||||   ||||||||||||||||||    
T  20482504 tttcataccattttctactagcatgcttgaggccatagagagatttggacaatttgcaaacttgatt 20482570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 21807636 - 21807717
Alignment:
Q  69 aaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatatttta 150  Q
    |||||||| | |||||| ||||| || ||| ||||||| || |||  ||||||||| ||||||||||||||||| |||||||    
T  21807636 aaaagatcaagacaatactttctttgacaaagagagattccttgtgaagaatgagcaacctctaaaccaagaaagtatttta 21807717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 23682311 - 23682248
Alignment:
Q  105 ataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttga 168  Q
    ||||| |||| ||||||||| |||||||||||||| |||||||||| |||  | ||||||||||    
T  23682311 ataccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttga 23682248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 427
Target Start/End: Complemental strand, 26215092 - 26214899
Alignment:
Q  234 ataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtaatctgaatttgcatgcttatagccttgagcca 333  Q
    |||||||||||||| || ||||||| ||||||||| | |  || ||| || ||||| ||||| || | |||||| || |||||||| || ||||||||||    
T  26215092 ataatatcatctacataaaccaaaaggatagtgaatgcagtagctgatgatttggtaaagagtgaatgatctgagttagcatgcttgtaaccttgagcca 26214993  T
Q  334 gtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttaga 427  Q
    |||| ||||   |||||||||||||||||||||||  ||| ||||| || |||||||| ||||| | |||||| ||||||||||||||||||||    
T  26214992 gtaacaaagaggtgagcctttcataccattttctagaggcttgcttcaatccatagagggattttaccaatttacaaacttgattaggtttaga 26214899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 424
Target Start/End: Original strand, 9802608 - 9802747
Alignment:
Q  285 ttggtgaagagagagtaatctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaac 384  Q
    |||||||| ||||||| || ||||||||| |||||  | ||||||||||  | ||| | | ||||| | |||||||| ||||| || || |||||||| |    
T  9802608 ttggtgaatagagagtgatatgaatttgcttgcttgaaaccttgagccacaagtaatgaagtgagcttctcataccactttctgctagcttgctttaatc 9802707  T
Q  385 catagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  9802708 catagagagatttaatcagtttgcaaacttgatttggttt 9802747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 427
Target Start/End: Complemental strand, 6532205 - 6532061
Alignment:
Q  282 gacttggtgaagagagagtaatctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgcttta 381  Q
    ||||| ||||| ||||| | |||||| || |||||||| ||||||||| ||||||||||||   | | | |||||||||||||||||  ||| || || |    
T  6532205 gactttgtgaaaagagaatgatctgagttggcatgcttgtagccttgaaccagtaataaagatgttaacttttcataccattttctagaggcttgtttca 6532106  T
Q  382 aaccatagagagatttaatcaatttgcaaacttgattaggtttaga 427  Q
    | |||||||| ||||||| ||||||||||||||| |||||||||||    
T  6532105 atccatagagggatttaaccaatttgcaaacttg-ttaggtttaga 6532061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 49639865 - 49639934
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 421  Q
    |||||||||||||||||||||||||||| |||||||| ||||| || | ||| ||||||| |||||||||    
T  49639865 tttcataccattttctactggcctgcttcaaaccatatagagacttcaacaacttgcaaaattgattagg 49639934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 37737425 - 37737498
Alignment:
Q  102 gagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaa 175  Q
    ||||| || |||| ||||||||| |||||||||||||| |||||||||| |||  | |||||||||||||||||    
T  37737425 gagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaa 37737498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 9802434 - 9802501
Alignment:
Q  111 tgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaagga 178  Q
    |||| |||| |||| || ||||||||||| |||||||||| |||  | ||||||||||||||||||||    
T  9802434 tgttcagaacgagctacttctaaaccaaggaaatattttaattggccaagatctttgattttgaagga 9802501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 424
Target Start/End: Original strand, 23374177 - 23374289
Alignment:
Q  312 gcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaa 411  Q
    |||||||| || ||||||||||| |||||||   |||||||||||||||||||||||  ||| |||||||| |||||||| ||||||| |||||| ||||    
T  23374177 gcatgcttgtaaccttgagccagcaataaagaggtgagcctttcataccattttctagaggcttgctttaatccatagagggatttaaccaatttacaaa 23374276  T
Q  412 cttgattaggttt 424  Q
    || ||||||||||    
T  23374277 ctagattaggttt 23374289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 53979434 - 53979365
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 421  Q
    |||||||||||||||||||||||||||| |||||||| ||||| || | ||| ||||||| |||||||||    
T  53979434 tttcataccattttctactggcctgcttcaaaccatatagagacttcaacaacttgcaaaattgattagg 53979365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 31193957 - 31194029
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  31193957 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 31194029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 52774356 - 52774284
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  52774356 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 52774284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 31273841 - 31273428
Alignment:
Q  12 acagatggatcagaaggtgtggaaataggtttcgaataagtaagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccct 111  Q
    ||||| || |||||||| |||||||||||||| || | ||| |||| ||||||||| | |||||| | ||||||||||||||| ||| | |||||||| |    
T  31273841 acagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaagatctagacaatattttctctgacaaagtgagatacctt 31273742  T
Q  112 gttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaaggaagcatgcaagatagacttgacattagtaaactc 211  Q
    |||  || ||||| || |  ||||| ||||| || || |||||| ||| |||||| |||||||| |||||| ||| ||  || ||||  ||  |||||||    
T  31273741 gtttggagtgagcaacttgcaaacccagaaagtacttgagttgtcctaaatctttaattttgaaagaagcacgcaggacggatttgatgttgttaaactc 31273642  T
Q  212 atacatatagttaccaccatggataatatcatctacgtacaccaaaatgatagtgaaagtatcagatgaggacttggtgaagagagagtaatctgaattt 311  Q
    | | ||  | || |  | |   |||||||||||||| || ||||||||||| ||||| |||  || ||| || ||||| || || || | || ||| ||     
T  31273641 aga-atgaatttcctgctaaa-ataatatcatctacatagaccaaaatgatggtgaatgtagtagctgaagatttggtaaatagtgaatgatatgagtta 31273544  T
Q  312 gcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaa 411  Q
    |||||||| || |||||||||| ||| ||||   ||||||||||||||||||||||   |||  |||| || |||||||| ||||||| |||||  ||||    
T  31273543 gcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctggaggctcgcttcaatccatagagggatttaaccaattatcaaa 31273444  T
Q  412 cttgattaggtttaga 427  Q
    ||||||| ||||||||    
T  31273443 cttgattgggtttaga 31273428  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 6343654 - 6343588
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 418  Q
    ||||||||||||||||||| |||||||| |  ||||||||||||||   ||||||||||||||||||    
T  6343654 tttcataccattttctactagcctgcttgaggccatagagagatttggacaatttgcaaacttgatt 6343588  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 26134768 - 26134696
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  26134768 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 26134696  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 388
Target Start/End: Original strand, 6568525 - 6568559
Alignment:
Q  354 tcataccattttctactggcctgctttaaaccata 388  Q
    ||||||||||||||||||||||||||||| |||||    
T  6568525 tcataccattttctactggcctgctttaatccata 6568559  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 28561373 - 28561296
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaag 429  Q
    |||||||||| ||||| || || ||||||   ||||| |||||||| || | ||||||||||||||||||||| ||||    
T  28561373 tttcataccactttctgctagcttgctttggtccataaagagatttcatgagtttgcaaacttgattaggtttggaag 28561296  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 15194416 - 15194347
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 421  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||||    
T  15194416 tttcataccattttctactggcctgcttcaaaccatatagagatttcaacaacttgcaaacttgattagg 15194347  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 424
Target Start/End: Original strand, 18551355 - 18551504
Alignment:
Q  275 agatgaggacttggtgaagagagagtaatctgaatttgcatgcttatagccttgagccagtaataaagcaatgagcctttcataccattttctactggcc 374  Q
    ||||||||| || ||||||||||| | |||||||||| | |||||  | ||||||||||  | ||| |   ||||| | |||| ||| ||||| || ||     
T  18551355 agatgaggattttgtgaagagagaatgatctgaattttcttgcttgaaaccttgagccataagtaatgaggtgagcatctcatgccactttctgctagct 18551454  T
Q  375 tgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  18551455 tgctttaatccatagagagatttaatcagtttacaaacttgatttggttt 18551504  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 15886233 - 15886304
Alignment:
Q  354 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttta 425  Q
    |||||||| |||||||||||||||||||||||||| |  || |||| || ||| ||||||||||| ||||||    
T  15886233 tcataccactttctactggcctgctttaaaccatataatgacttaagcagtttacaaacttgattgggttta 15886304  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 44230460 - 44230396
Alignment:
Q  354 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 418  Q
    ||||||||||||||||| || || || |||||||| | |||||||| || |||||| ||||||||    
T  44230460 tcataccattttctacttgcttgtttgaaaccatacaaagatttaagcagtttgcagacttgatt 44230396  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 23884047 - 23884169
Alignment:
Q  53 aagacttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattttagt 152  Q
    ||||| ||||||||| |  | |||||||||||| ||||| |||||  | ||||| || |||| ||||||||| |||||||||||||| |||||||||| |    
T  23884047 aagacctgaatcagcaagcaaatccaaacaatactttctttggcatagtgagattccttgtttagaatgagctacctctaaaccaaggaaatattttaat 23884146  T
Q  153 tgttctagatctttgattttgaa 175  Q
    ||  | |||||||||||||||||    
T  23884147 tggccaagatctttgattttgaa 23884169  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 36731534 - 36731608
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttag 426  Q
    |||||||||||||||| || || ||||| || |||||||| |||||||||| |||||| || ||||| |||||||    
T  36731534 tttcataccattttctgctagcttgcttcaatccatagagggatttaatcagtttgcatacctgatttggtttag 36731608  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 16989669 - 16989735
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 418  Q
    |||||||||||| |||||| || ||||| |  ||||||||||||||   ||||||||||||||||||    
T  16989669 tttcataccattgtctactagcttgcttgaggccatagagagatttggacaatttgcaaacttgatt 16989735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 20322631 - 20322732
Alignment:
Q  74 atccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttg 173  Q
    |||||| ||||||||  |||| ||| ||||||||||  ||||||||||||| || || |  ||||| ||  |||||| |||| ||| |||||||||||||    
T  20322631 atccaagcaatatttcttctgacaaagagagataccaagttgagaatgagcaacttcaagtccaaggaagaattttaattgtcctaaatctttgattttg 20322730  T
Q  174 aa 175  Q
    ||    
T  20322731 aa 20322732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 26465351 - 26465419
Alignment:
Q  80 acaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatattt 148  Q
    |||||||||||| |||||| ||||||| || |||   |||||||| || |||||||||||||| |||||    
T  26465351 acaatattttctttggcaaagagagatgccttgtgaggaatgagcaacttctaaaccaagaaagtattt 26465419  T

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Target: scaffold0164 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 25938 - 26007
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 421  Q
    |||||||||||||||||||||||||||| |||||||| ||||| || | ||| ||||||| |||||||||    
T  25938 tttcataccattttctactggcctgcttcaaaccatatagagacttcaacaacttgcaaaattgattagg 26007  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 18255283 - 18255214
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 421  Q
    |||||||||||||||||||||||||||| |||||||| | ||| || | ||| |||||||||||||||||    
T  18255283 tttcataccattttctactggcctgcttcaaaccatatatagacttcaacaacttgcaaacttgattagg 18255214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 13989306 - 13989234
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  13989306 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 13989234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 23166289 - 23166364
Alignment:
Q  354 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttagaag 429  Q
    |||||||| ||||||||||| || ||||||||||| ||||||||| | || ||||| ||||||||  |||||||||    
T  23166289 tcataccactttctactggcttgttttaaaccataaagagatttagttaacttgcagacttgattgagtttagaag 23166364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 22644792 - 22644738
Alignment:
Q  372 gcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtttag 426  Q
    |||||||| |||||||| || |||||  |||||||||||||||||| ||||||||    
T  22644792 gcctgcttcaaaccataaagggatttcttcaatttgcaaacttgatgaggtttag 22644738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 16988318 - 16988237
Alignment:
Q  69 aaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagaaaatatttta 150  Q
    |||||||| | |||||| ||||| || ||| ||||||| || |||   |||||||| ||||||||||||||||| |||||||    
T  16988318 aaaagatcaagacaatactttctttgacaaagagagattccttgtgaggaatgagcaacctctaaaccaagaaagtatttta 16988237  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 3004997 - 3004924
Alignment:
Q  102 gagataccctgttgagaatgagccacctctaaaccaagaaaatattttagttgttctagatctttgattttgaa 175  Q
    ||||| || |||| ||||||||| |||||||||||||| |||||||||| |||  | |||||||||||||||||    
T  3004997 gagattccttgtttagaatgagcaacctctaaaccaaggaaatattttaattggccaagatctttgattttgaa 3004924  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 16257846 - 16257774
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  16257846 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 16257774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 19813566 - 19813638
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||| ||||| || || ||||| || |||||||||||||| || | ||| ||||||||||| |||||    
T  19813566 tttcataccactttctgctagcttgcttcaatccatagagagattttattagtttacaaacttgatttggttt 19813638  T

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Target: scaffold0014 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 94611 - 94683
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggttt 424  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| || | |||||| || |||||||| |||||    
T  94611 tttcataccattttctgctggcttgctttaaaccataaagagacttcaacaatttacacacttgatttggttt 94683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 77 - 143
Alignment:
Q  352 tttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgatt 418  Q
    ||||||||||||||||||| || ||||| |  ||||||||||||||   ||||||||||||||||||    
T  77 tttcataccattttctactagcatgcttgaggccatagagagatttggacaatttgcaaacttgatt 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 23350 - 23283
Alignment:
Q  354 tcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattagg 421  Q
    ||||||||||||||||| ||||| || || ||||| || |||||  |||||||||| |||||||||||    
T  23350 tcataccattttctactagcctgtttcaatccataaagtgatttgttcaatttgcagacttgattagg 23283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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