View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13084_low_6 (Length: 297)
Name: NF13084_low_6
Description: NF13084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13084_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 3948531 - 3948813
Alignment:
| Q |
1 |
aggctacaatatctagccataagatgttgccataaactacaaagtctgccagacctacctcaatctcttgaaattatacttgtgaacaagaaaagggttg |
100 |
Q |
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| T |
3948531 |
aggctacaatatctagccataagatgttgccataaactgcaaagtctgccagacctacctcaatctcttgaaattctacttgtgaacaagaaaagggttg |
3948630 |
T |
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| Q |
101 |
ttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--gtgttta |
198 |
Q |
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| T |
3948631 |
ttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgcgaatattgtgttta |
3948730 |
T |
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| Q |
199 |
atttgcaaataaacattctgaaatttgcataccaacatgtatcagcttcagaacaggattttcataataagttcaatgattat |
281 |
Q |
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| T |
3948731 |
atttgcaaataaacattctgaaatttgcataccaacatttatcagcttcagaacaggattttcataataagttcaatgattat |
3948813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 97 - 281
Target Start/End: Original strand, 3965642 - 3965828
Alignment:
| Q |
97 |
gttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--gtg |
194 |
Q |
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| T |
3965642 |
gttgttcccttcaattcctgaacaattcaaggagaacaggtatagggttgtattcgcgaattgcttgaaattggatgaacattctcttgcaaatattgcg |
3965741 |
T |
|
| Q |
195 |
tttaatttgcaaataaacattctgaaatttgcataccaacatgtatcagcttcagaacaggattttcataataagttcaatgattat |
281 |
Q |
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| T |
3965742 |
tttaatgcgcaaataaacaatatgaaatttgcatgccaacatgtatcagctttggaacatgattttcataataagttcaatgattat |
3965828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 3804320 - 3804171
Alignment:
| Q |
95 |
gggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--g |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||| | |
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| T |
3804320 |
gggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttaaaattggatgaataatctccctcgaatactg |
3804221 |
T |
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| Q |
193 |
tgtttaatttgcaaataaacattctgaaatttgcataccaacatgtatca |
242 |
Q |
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| T |
3804220 |
tatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatca |
3804171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 4016671 - 4016519
Alignment:
| Q |
97 |
gttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata--gtg |
194 |
Q |
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| T |
4016671 |
gttgttcccttcaattgctgaacaattcaaggagaacaggaaaagggttgtgtttgcgaattgcttgaaattggacgagcattcactcgcaaatattgtg |
4016572 |
T |
|
| Q |
195 |
tttaatttgcaaataaacattctgaaatttgcataccaacatgtatcagcttc |
247 |
Q |
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| T |
4016571 |
tttaatgctcaaataaacattaccaaatttgcataccaacatgtatcagcttc |
4016519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 4000467 - 4000384
Alignment:
| Q |
108 |
caatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctcgtgaata |
191 |
Q |
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||||||||||||||| |||||| |||| ||||||| ||| ||| ||||||||| || |||||||||||||||||||| |||| |
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| T |
4000467 |
caatttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgcttcaacttggatgaacattctctcgtaaata |
4000384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 3804429 - 3804352
Alignment:
| Q |
4 |
ctacaatatctagccataagatgttgccataaactacaaagtctgccagacctacctcaatctcttgaaattatactt |
81 |
Q |
| |
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| T |
3804429 |
ctacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaaattatactt |
3804352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 4023396 - 4023307
Alignment:
| Q |
98 |
ttgttcccttcaa---tttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctctc |
184 |
Q |
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| T |
4023396 |
ttgttcccttcaacagtttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgctggaacttggatgaacattctctc |
4023307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 3921838 - 3921926
Alignment:
| Q |
98 |
ttgttcccttcaa---tttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttgaaattggatgaacattctct |
183 |
Q |
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||||||||||||| || ||||||||| |||||| |||| ||||||||||| ||| ||||||||| || |||||||||| |||||| |
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| T |
3921838 |
ttgttcccttcaacagttgctgaacaattcaaggaaaacaagaaaagggttgagttctggaattgcttcaacttggatgaactttctct |
3921926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 3965538 - 3965603
Alignment:
| Q |
7 |
caatatctagccataagatgttgccataaactacaaagtctgccagacctacctcaatctcttgaa |
72 |
Q |
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| T |
3965538 |
caatatctagacataagatattgccttaagctgcaaactctaccagagcttcctcaatctcttgaa |
3965603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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