View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_high_28 (Length: 237)
Name: NF13085_high_28
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_high_28 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 1053561 - 1053772
Alignment:
| Q |
17 |
ttgatgagaaaactgaatgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1053561 |
ttgatgagaaaactgaatgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaat |
1053660 |
T |
|
| Q |
117 |
caatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1053661 |
caatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctctt |
1053760 |
T |
|
| Q |
217 |
aacaagtataat |
228 |
Q |
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|||||||||||| |
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| T |
1053761 |
aacaagtataat |
1053772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 1046888 - 1047100
Alignment:
| Q |
16 |
attgatgagaaaactgaatgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaa |
115 |
Q |
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|||||||| ||||| |||||| | | | ||||||| || | ||||||| ||||||||| ||||| |||||||| ||| |||||||||||| ||| || | |
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| T |
1046888 |
attgatgataaaacaaaatgtcttcacaacttggtgccagtgagaaaggctttcaatggcactttcatggttaccggaagctatgaaagactagacggga |
1046987 |
T |
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| Q |
116 |
tcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctct |
215 |
Q |
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| T |
1046988 |
tcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctcccct |
1047087 |
T |
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| Q |
216 |
taacaagtataat |
228 |
Q |
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|||||||||||| |
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| T |
1047088 |
aaacaagtataat |
1047100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 1044333 - 1044514
Alignment:
| Q |
47 |
tggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatct |
146 |
Q |
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||||| |||| ||||||| ||||||||| |||| |||| | | ||||||||||| |||||||| || ||| |||||||||||||||| | ||||||||| |
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| T |
1044333 |
tggtgccaatgagaaaggctttcaatggctctttcatggctgcaggaggctatgacagacaagacgggatcgatgctatagctgaaaacaaggcagatct |
1044432 |
T |
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| Q |
147 |
tattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataat |
228 |
Q |
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| | | |||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1044433 |
tgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaacaagtataat |
1044514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 1033957 - 1034114
Alignment:
| Q |
58 |
agaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatcttattgcttatg |
157 |
Q |
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||||||| ||||||||| ||||| |||||| | ||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||| ||| ||||| |
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| T |
1033957 |
agaaaggctttcaatggtactttcatggttgcgggaggttatgacagacaagatgggatcaatgctatagcagataatagggcagatcttgttgtttatg |
1034056 |
T |
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| Q |
158 |
gtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctct |
215 |
Q |
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| T |
1034057 |
gtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctct |
1034114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 1640627 - 1640430
Alignment:
| Q |
30 |
tgaatgtcattatagcttggtgtcaataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagct |
129 |
Q |
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|||||||| | | ||||||||| |||| ||||| | ||||||||||||||||| ||| | ||||||||| |||||||||| || |||| |||| | |
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| T |
1640627 |
tgaatgtcttcacagcttggtgccaatgagaaaagccttcaatggaacttttatagttgccggaggctattcgcgacaagatgggattgatgccatagtt |
1640528 |
T |
|
| Q |
130 |
gaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataa |
227 |
Q |
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| T |
1640527 |
gaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatgctcctctcaacaagtataa |
1640430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 1065954 - 1066128
Alignment:
| Q |
53 |
caataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatcttattgc |
152 |
Q |
| |
|
|||| ||||||| ||||| || ||||| |||||| | ||||| || || |||| ||||| |||||||| ||||||||||| |||||||| ||| ||| |
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| T |
1065954 |
caatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagaccttgttgt |
1066053 |
T |
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| Q |
153 |
ttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataa |
227 |
Q |
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| T |
1066054 |
atatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctcctctgaacaaatataa |
1066128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 1058918 - 1059036
Alignment:
| Q |
109 |
gatggaatcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatg |
208 |
Q |
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||||| |||||||| ||||||||||||||| |||| ||| ||| ||||||||||||||| || ||||||||||||| || ||||||||||||||||||| |
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| T |
1058918 |
gatgggatcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatg |
1059017 |
T |
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| Q |
209 |
ctcctcttaacaagtataa |
227 |
Q |
| |
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||||||| ||||||||||| |
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| T |
1059018 |
ctcctctaaacaagtataa |
1059036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 1071681 - 1071855
Alignment:
| Q |
53 |
caataagaaaggttttcaatggaacttttatggttactggaggctatgaaagacaagatggaatcaatgctatagctgaaaatagggcagatcttattgc |
152 |
Q |
| |
|
|||| ||||||| ||||| || ||||| |||||| | ||||| || || |||| ||||| |||||||| ||||||||||| |||||||| || ||| |
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| T |
1071681 |
caatgagaaaggccttcaaaggcactttcatggttgcaggaggttacgaccgacatgatgggatcaatgccatagctgaaaacagggcagacctagttgt |
1071780 |
T |
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| Q |
153 |
ttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctcttaacaagtataa |
227 |
Q |
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||||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| |
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| T |
1071781 |
atatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctcctctaaacaagtataa |
1071855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 65854 - 65937
Alignment:
| Q |
118 |
aatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgca |
201 |
Q |
| |
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||||||||||| ||||||| |||||||||| ||| ||||||||||| |||| || |||||||| |||| ||||||||||||||| |
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| T |
65854 |
aatgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 12121407 - 12121338
Alignment:
| Q |
132 |
aaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgca |
201 |
Q |
| |
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||||| |||||||||| ||| |||||||||||||||| || ||||||||||||| |||| |||||||||| |
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| T |
12121407 |
aaataaggcagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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