View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_high_9 (Length: 401)
Name: NF13085_high_9
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 92 - 390
Target Start/End: Complemental strand, 25572305 - 25571987
Alignment:
| Q |
92 |
ttgaatttgaattgagtgaggtcgggtaatgagaattttgtctgcagaattttcactatcaaggtgaaagagagattttccaatgtgaaa---------- |
181 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25572305 |
ttgaatttgaattgagtgaggtggggtaatgagaatt--gtctgcaaaattttcactatcaaggtgaaagagagattttccaacgtgaaaacagtgaatg |
25572208 |
T |
|
| Q |
182 |
-ttctgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaatgac |
280 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||| | |
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| T |
25572207 |
attttgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaattgaacatttgtttttttcttaataacacacctgaaaatgcc |
25572108 |
T |
|
| Q |
281 |
atttcttagagggaaattaacacattcaaatttttatgagctaaaatca-----------atttttattgtgtaaatttgaaattgttatggttttgtgg |
369 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| | |
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| T |
25572107 |
atttcttagagggaaattaacacattcaattttttatgaactaaaatgaattttgatgttatttttattgtgtaaatttgaaattgttatggttttgttg |
25572008 |
T |
|
| Q |
370 |
tccctattactataagtgatg |
390 |
Q |
| |
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||||||||||||||||||||| |
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| T |
25572007 |
tccctattactataagtgatg |
25571987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 92 - 390
Target Start/End: Complemental strand, 26006773 - 26006455
Alignment:
| Q |
92 |
ttgaatttgaattgagtgaggtcgggtaatgagaattttgtctgcagaattttcactatcaaggtgaaagagagattttccaatgtgaaa---------- |
181 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26006773 |
ttgaatttgaattgagtgaggtggggtaatgagaatt--gtctgcaaaattttcactatcaaggtgaaagagagattttccaacgtgaaaacagtgaatg |
26006676 |
T |
|
| Q |
182 |
-ttctgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaatgac |
280 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||| | |
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| T |
26006675 |
attttgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaattgaacatttgtttttttcttaataacacacctgaaaatgcc |
26006576 |
T |
|
| Q |
281 |
atttcttagagggaaattaacacattcaaatttttatgagctaaaatca-----------atttttattgtgtaaatttgaaattgttatggttttgtgg |
369 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| | |
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| T |
26006575 |
atttcttagagggaaattaacacattcaattttttatgaactaaaatgaattttgatgttatttttattgtgtaaatttgaaattgttatggttttgttg |
26006476 |
T |
|
| Q |
370 |
tccctattactataagtgatg |
390 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26006475 |
tccctattactataagtgatg |
26006455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 181 - 390
Target Start/End: Complemental strand, 26125441 - 26125220
Alignment:
| Q |
181 |
attctgaaaa-gaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaatga |
279 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||| ||||||||| |
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| T |
26125441 |
attctgaaaatgaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaattgaacatttgtttttttcttaataacacacttgaaaatga |
26125342 |
T |
|
| Q |
280 |
catttcttagagggaaattaacacattcaaatttttatgagctaaaatca-----------atttttattgtgtaaatttgaaattgttatggttttgtg |
368 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
26125341 |
catttcttagagggaaattaacacattcaattttttatgaactaaaatgaattttgatgttatttttattgtgtaaatttgaaattgttatggttttgtt |
26125242 |
T |
|
| Q |
369 |
gtccctattactataagtgatg |
390 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
26125241 |
gtccctattactataagtgatg |
26125220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 25572584 - 25572516
Alignment:
| Q |
18 |
caacaaaccagagggagagagtgagagaataagataatggttctatagtttgaacatgaacatggatca |
86 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
25572584 |
caacaaaccagagggagagagtgagagattaagataatggttctataatttgaacatgaacatggatca |
25572516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 26007052 - 26006984
Alignment:
| Q |
18 |
caacaaaccagagggagagagtgagagaataagataatggttctatagtttgaacatgaacatggatca |
86 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
26007052 |
caacaaaccagagggagagagtgagagattaagataatggttctataatttgaacatgaacatggatca |
26006984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 45048025 - 45047812
Alignment:
| Q |
181 |
attctgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaa--tg |
278 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| || |
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| T |
45048025 |
attctgaaaataggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttaacatttgtttttttcttaataacacacctgaaaaaatg |
45047926 |
T |
|
| Q |
279 |
acatttcttagagggaaattaacacattcaaatttttatgagctaaaatcaatttttattgtgtaaatttgaaattgttatggttttgtggtccctatta |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45047925 |
acatttcttagagggaaattaacacattcaaatttttacgagctaaaatcaatttttattgtgtaaatttaaaattgttatggttttgtggtccctatta |
45047826 |
T |
|
| Q |
379 |
ctataagtgatgat |
392 |
Q |
| |
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|||||||||||||| |
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| T |
45047825 |
ctataagtgatgat |
45047812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 45048299 - 45048226
Alignment:
| Q |
17 |
acaacaaaccagagggagagagtgagagaataagataatggttctatagtttgaacatgaacatggatcaggag |
90 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45048299 |
acaacaaaccagagggagagagtgagagaataagataatggttctatagtttcaacatgaacatggatcaggag |
45048226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 45048085 - 45048047
Alignment:
| Q |
92 |
ttgaatttgaattgagtgaggtcgggtaatgagaatttt |
130 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
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| T |
45048085 |
ttgaatttgaattgagtgaggtggggtaatgagaatttt |
45048047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 25428100 - 25428040
Alignment:
| Q |
333 |
tttattgtgtaaatttga-aattgttatggttttgtggtccctattactataagtgatgat |
392 |
Q |
| |
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||||||||| |||| ||| |||||||||||||||||||||||||||| || | |||||||| |
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|
| T |
25428100 |
tttattgtgaaaatgtgagaattgttatggttttgtggtccctattattaaatgtgatgat |
25428040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 23363099 - 23363038
Alignment:
| Q |
331 |
tttttattgtgtaaatttgaaattgttatggttttgtggtccctattactataagtgatgat |
392 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23363099 |
tttttattgtgtaaatttcaaattgttatggttttgtggtccctattactataagtgatgat |
23363038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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