View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13085_low_1 (Length: 790)
Name: NF13085_low_1
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_1 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 601; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 18 - 781
Target Start/End: Complemental strand, 11297922 - 11297152
Alignment:
| Q |
18 |
tttcttccttgtactattgtaatgcaaagcaagacaattgagaaaagattaactactttgctgctggccat---gacaatgtagttaattatgcttatgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11297922 |
tttcttccttgtactattgtaatgcaaagcaagacaattgataaaagattaactactttgctgctggccatattgacaatgtagttaattatgcttatgc |
11297823 |
T |
|
| Q |
115 |
tcatccataggaacagtttttataggctaaaacaaattaagttgaagacaaaattgcacttaattaatgtgattattaatgattgtgttcacgctaagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11297822 |
tcatccataggaacagtttttataggctaaaacaaattaagttgtagacaaaattgcacttaattaatgtgataattaatgattgtgttcacgctaagaa |
11297723 |
T |
|
| Q |
215 |
atttatgatcgataagaaaacattagcattaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgattttgacaatttaggtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11297722 |
atttatgatcgataagaaaacattagcattaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgattttggcaatttaggtt |
11297623 |
T |
|
| Q |
315 |
gacgtaactcgtatgctatattactagttggagtttgttcttagaagtgttgatttgtgatttataaatgaatctgttatcattaatttgtcgagtttga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11297622 |
gacgtaactcgtatgctatattactagttggagtttgttctt-gaagtgttgatttgtgatttataaatgaatctgttatcattaatttgtcgagtttga |
11297524 |
T |
|
| Q |
415 |
cacattacgttaaccgagagttattatagatgattttgcacgtacgttaaccaaggt----nnnnnnnntgaagtgtttgatg-ccctcaactctatgaa |
509 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | || |||||||||||||||| |
|
|
| T |
11297523 |
tacattacgctaaccgagagttattatagataattttgcacgtacgttaaccaaggtaaaaaaaaaaaatgaagtgttcgctgcccctcaactctatgaa |
11297424 |
T |
|
| Q |
510 |
accttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagcc |
609 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11297423 |
accttagaaagcttcatgacccaatggctttcattgcattttcttcaagcaatattgacacgttgttagtgatgatatatttcatatggttcattcagca |
11297324 |
T |
|
| Q |
610 |
ttccaaacaggttatttttagccggacatctcaaacaatcattgcactcattcaaaaaattgatcttcctagcacatataaatattttagacccatcagt |
709 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
11297323 |
tttcaaacaggttatttttagccggacatctcaaacaatcattgcactcattccaaaaattgatcctcctagtacatacaaagattttagacccatcagt |
11297224 |
T |
|
| Q |
710 |
ctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatatt |
781 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11297223 |
ctctgcaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacctattcttactaatatt |
11297152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 11292569 - 11292399
Alignment:
| Q |
18 |
tttcttccttgtactattgtaatgcaaagcaagacaattgagaaaagattaactactttgctgctggccat---gacaatgtagttaattatgcttatgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||| |||||| |
|
|
| T |
11292569 |
tttcttccttgtactattgtaatgcaaagcatgacaattgagaaaagattaactactttcctcctggccatattgacaatgtggttaattatgtttatgc |
11292470 |
T |
|
| Q |
115 |
tcatccataggaacagtttttataggctaaaacaaa----ttaagttgaagacaaaattgcacttaattaa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
11292469 |
tcatccataggaacagtttttataggctaaaacaaattaattaagttgaagacaaaattgcatttaattaa |
11292399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 297 - 431
Target Start/End: Complemental strand, 11292227 - 11292093
Alignment:
| Q |
297 |
attttgacaatttaggttgacgtaactcgtatgctatattactagttggagtttgttcttagaagtgttgatttgtgatttataaatgaatctgttatca |
396 |
Q |
| |
|
|||||| |||||| | |||||||||||| || ||||| |||||||||||||||||||||| |||||||| | ||||||||||||| ||||| ||||| || |
|
|
| T |
11292227 |
attttggcaatttggattgacgtaactcctaggctatcttactagttggagtttgttctt-gaagtgttaaattgtgatttataattgaatttgttaaca |
11292129 |
T |
|
| Q |
397 |
ttaa-tttgtcgagtttgacacattacgttaaccga |
431 |
Q |
| |
|
|||| ||||| |||||||| ||||||| ||||||| |
|
|
| T |
11292128 |
ttaattttgttgagtttgagacattacactaaccga |
11292093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 11292374 - 11292258
Alignment:
| Q |
183 |
gtgattattaatgattgtgttcacgctaagaaatttatgatcgataagaaaacattagcattaccatagcattcgaaacattggcaatcatagacaaatt |
282 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||| | || || ||| |||||| |
|
|
| T |
11292374 |
gtgattattaatagttgtgttcacgctaagaaatttatgatcaataacaaaacattgagattacctgagcgttcgaaacatcgacattcttaggcaaatt |
11292275 |
T |
|
| Q |
283 |
actatgttaatgtgatt |
299 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
11292274 |
actaagttaatgtgatt |
11292258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 480 - 764
Target Start/End: Complemental strand, 24894492 - 24894206
Alignment:
| Q |
480 |
tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt |
579 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| || ||||||| | | ||||| || ||||| || || ||||| ||||||| || || ||| | |
|
|
| T |
24894492 |
tgaagtttttgtcgccctcaactccatgaaaccatacaaagcccctggctcggatggattccattgtatctttttcaaacaatattggcatatagttgga |
24894393 |
T |
|
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttc |
677 |
Q |
| |
|
||||| || || |||||||| ||| |||||||||| |||||| | ||| | ||||| || ||||||| || ||||||||||||| ||||| || | | |
|
|
| T |
24894392 |
gatgacatcttccatatggtccatacagccttccacacaggtcactttgatccggagatttcaaacactctcattgcactcattccgaaaatcgaccccc |
24894293 |
T |
|
| Q |
678 |
ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagac |
764 |
Q |
| |
|
| | ||| | ||| ||||||||||||||||||| | ||||||||||||||| |||||| | |||||| | |||||||||||||||| |
|
|
| T |
24894292 |
ccaccactttcaaagattttagacccatcagtctatgcaacataatctacaagattatccctaaagttcttgtgcatcgtctcagac |
24894206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 627
Target Start/End: Original strand, 35232983 - 35233130
Alignment:
| Q |
480 |
tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt |
579 |
Q |
| |
|
|||||| |||| |||||| ||||| |||||||| || ||||| | | |||| ||||| || |||||||| ||||||||| ||||||| || ||| || | |
|
|
| T |
35232983 |
tgaagtctttgctgccctaaactccatgaaaccctacaaagctccaggaccagatggtttccattgcatattcttcaagcaatattggcatattattgga |
35233082 |
T |
|
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttt |
627 |
Q |
| |
|
||||||||||| || | ||| | ||||||||||||| ||| ||||| |
|
|
| T |
35233083 |
gatgatattttctatctagttaaaacagccttccaaaccggtgatttt |
35233130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 621
Target Start/End: Original strand, 13599161 - 13599222
Alignment:
| Q |
560 |
aatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggt |
621 |
Q |
| |
|
||||||| |||||| || | |||||||||| ||||||||| || ||||||||||||| |||| |
|
|
| T |
13599161 |
aatattggcacattattggggatgatatttctcatatggtgcagtcagccttccaaaaaggt |
13599222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 480 - 778
Target Start/End: Complemental strand, 5193707 - 5193407
Alignment:
| Q |
480 |
tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt |
579 |
Q |
| |
|
||||||||||| |||||| || || |||||||| || ||||| | ||||||| ||| |||||||| ||||| || ||||||| ||||| ||| | |
|
|
| T |
5193707 |
tgaagtgtttgctgcccttaattccatgaaaccatacaaagcacccgaccccgatgacttccattgcatcttctttaaacaatattggcacatagttgga |
5193608 |
T |
|
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttc |
677 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||| | ||| | ||||| ||||||| || || ||||||||||||| |||||||||| | |
|
|
| T |
5193607 |
gatgatgtttttcacatggtctattcagccttccaaacaggtcactttgatccggagatctcaagcactctcattgcactcattccaaaaattgattcac |
5193508 |
T |
|
| Q |
678 |
ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa |
777 |
Q |
| |
|
| ||| || ||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||| ||| |
|
|
| T |
5193507 |
tcaacacttacaaagattttagacccatcagcctctgcaacataatctacaagattatcacaaaagttcttgtgcatcgtctcagacctattcttaataa |
5193408 |
T |
|
| Q |
778 |
t |
778 |
Q |
| |
|
| |
|
|
| T |
5193407 |
t |
5193407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 496 - 759
Target Start/End: Complemental strand, 50237202 - 50236937
Alignment:
| Q |
496 |
ctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcata |
595 |
Q |
| |
|
|||||||| ||||||||||| ||||| | |||| |||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| ||||| ||| |
|
|
| T |
50237202 |
ctcaactcaatgaaaccttacaaagcacctggaccagatggcttccattgcattttcttcaaacaatattggcacattgttggtgatgacattttacatt |
50237103 |
T |
|
| Q |
596 |
tggttcattcagccttccaaacaggttatttttagccggacatctcaa--acaatcattgcactcattcaaaaaattgatcttcctagcacatataaata |
693 |
Q |
| |
|
|||| || |||||||||| |||||| ||||| | || || ||||||| ||| ||||||||||||||| ||||||||||| || ||| || ||| | |
|
|
| T |
50237102 |
tggtacactcagccttcctcacaggtcattttgatccagagatctcaaacacactcattgcactcattcctaaaattgatctgcccgccacctacaaaga |
50237003 |
T |
|
| Q |
694 |
ttttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtct |
759 |
Q |
| |
|
||||| | ||||| || | ||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
50237002 |
ctttaggtctatcagcctttgtaacattgtctacaagattatcactaaagttttggtgcatcgtct |
50236937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 532 - 771
Target Start/End: Original strand, 43297907 - 43298148
Alignment:
| Q |
532 |
gatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggttatttttagc |
631 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||| ||||| ||| | |||||| ||||||| ||||| || ||||||||||||| |||| ||||| | | |
|
|
| T |
43297907 |
gatggcttccattgcatcttcttcaaacaatattggcacatagttggagatgatgtttttcacatggtccactcagccttccaaataggtcattttgatc |
43298006 |
T |
|
| Q |
632 |
cggacatctcaa--acaatcattgcactcattcaaaaaattgatcttcctagcacatataaatattttagacccatcagtctctccaacataatctacaa |
729 |
Q |
| |
|
||| || |||| || ||||||||||||||| ||||||||| || | ||| || ||| ||||||| ||||||||||||| |||||||||||| || |
|
|
| T |
43298007 |
tggagatttcaagcactctcattgcactcattcctaaaattgattcacccaacacttacaaagattttaggcccatcagtctctgcaacataatctataa |
43298106 |
T |
|
| Q |
730 |
aattatcacaaaagttttggtgcatcgtctcagacatattct |
771 |
Q |
| |
|
||||| ||||||||| | ||||| ||||||||| |||||| |
|
|
| T |
43298107 |
gattattacaaaagttcttgtgcactgtctcagacctattct |
43298148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 580 - 781
Target Start/End: Complemental strand, 31325505 - 31325302
Alignment:
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttc |
677 |
Q |
| |
|
|||||||||||||||||||| || ||||| || || || ||| | ||| | ||||| |||||||| | || ||||||||||||| |||||||||| | |
|
|
| T |
31325505 |
gatgatatttttcatatggtccactcagcttttcacactggtcactttgatccggagatctcaaaaactcttattgcactcattccaaaaattgattccc |
31325406 |
T |
|
| Q |
678 |
ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa |
777 |
Q |
| |
|
||| |||||| ||| |||||| ||| |||||||| | |||||||||||||| || || ||||||||| | ||||| || ||||| | |||||| | ||| |
|
|
| T |
31325405 |
ctaacacatacaaagattttaaacctatcagtctttgtaacataatctacaagatcattacaaaagttcttgtgcaccgcctcaggcctattctcaataa |
31325306 |
T |
|
| Q |
778 |
tatt |
781 |
Q |
| |
|
|||| |
|
|
| T |
31325305 |
tatt |
31325302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 532 - 750
Target Start/End: Original strand, 1524516 - 1524736
Alignment:
| Q |
532 |
gatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggttatttttagc |
631 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |||| || || || ||| | ||||| |||||||| |||| ||||||||||| |||| ||| ||||| | | |
|
|
| T |
1524516 |
gatggttttcaatgcatcttcttcaagaaatactggcatatagttggagatgacatttttcacttggtacattcagcctttcaaaatggtcattttgatc |
1524615 |
T |
|
| Q |
632 |
cggacatctcaaacaatc--attgcactcattcaaaaaattgatcttcctagcacatataaatattttagacccatcagtctctccaacataatctacaa |
729 |
Q |
| |
|
|||| || ||||| | || ||||||||||||| || ||||| ||||| || || ||| ||||||||||||||||| | | |||||| | || || |
|
|
| T |
1524616 |
cggagatttcaaatactctcattgcactcattcccaagattgacactcctaacatttacaaagattttagacccatcagtatgtgcaacattgtttataa |
1524715 |
T |
|
| Q |
730 |
aattatcacaaaagttttggt |
750 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
1524716 |
aattatcaccaaagttttggt |
1524736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 621
Target Start/End: Original strand, 23464853 - 23464975
Alignment:
| Q |
499 |
aactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatgg |
598 |
Q |
| |
|
||||||||||||||||| ||||| | | |||| |||||||| || |||||||| ||||| |||| || |||||| | | ||||||||||| |||||| |
|
|
| T |
23464853 |
aactctatgaaaccttacaaagcaccaggaccagatggcttccaatgcatttttttcaaacaatactggcacattactggagatgatattttcaatatgg |
23464952 |
T |
|
| Q |
599 |
ttcattcagccttccaaacaggt |
621 |
Q |
| |
|
| |||| || |||||||||||| |
|
|
| T |
23464953 |
tgcatttggctttccaaacaggt |
23464975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 750
Target Start/End: Original strand, 1524191 - 1524265
Alignment:
| Q |
676 |
tcctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggt |
750 |
Q |
| |
|
||||| ||| || ||| ||||||||||||||||||| | |||||| | || ||||||||||| ||||||||||| |
|
|
| T |
1524191 |
tcctaacacttacaaagattttagacccatcagtctgtgcaacattgtttataaaattatcaccaaagttttggt |
1524265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 487 - 773
Target Start/End: Original strand, 572693 - 572981
Alignment:
| Q |
487 |
tttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgata |
586 |
Q |
| |
|
|||| |||||| ||||| |||||||| || ||||| | | || |||||||| |||||||| |||||||| ||||||| ||||| ||| | ||||| | |
|
|
| T |
572693 |
tttgttgcccttaactccatgaaaccctacaaagcacccgggccagatggcttccattgcatcttcttcaaacaatattggcacatagttggagatgaca |
572792 |
T |
|
| Q |
587 |
tttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttcctagcac |
684 |
Q |
| |
|
| || ||||||||||| ||||| |||| |||||||||||| | | ||| |||||| ||| || ||||||||||||| |||||||||| ||| | ||| |
|
|
| T |
572793 |
tcttccatatggttcaatcagctttcctcacaggttattttgatctggagatctcatacactcttattgcactcattccaaaaattgattctcccatcac |
572892 |
T |
|
| Q |
685 |
atataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattctta |
773 |
Q |
| |
|
|| ||| |||||||||||||||| |||| ||| | |||||||| || |||||||||||| | ||||||||||| |||| |||||||| |
|
|
| T |
572893 |
ttacaaagattttagacccatcagcctctgcaatacgatctacaatatcatcacaaaagttcttgtgcatcgtcttagacctattctta |
572981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 480 - 777
Target Start/End: Original strand, 40327672 - 40327971
Alignment:
| Q |
480 |
tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt |
579 |
Q |
| |
|
||||||||| | ||||| |||||||||||| ||||| ||||||| | || || || |||||||||||||||||||| |||| || |||||||| | |
|
|
| T |
40327672 |
tgaagtgttcgctgcccacaactctatgaagccttacaaagcccctggtcctgacgggtttcattgcattttcttcaaacaatactggcacattgtcgga |
40327771 |
T |
|
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttc |
677 |
Q |
| |
|
||||||||||| | ||||| ||| |||||| ||| | ||||| ||| | ||||| |||||||||| ||||||| ||||||| ||||||||| | | |
|
|
| T |
40327772 |
gatgatattttcaaaatggtccatgcagcctaccatagtggttactttgatccggagatctcaaacactctcattgcgctcattccaaaaattgaaccac |
40327871 |
T |
|
| Q |
678 |
ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa |
777 |
Q |
| |
|
| | || || ||| |||| |||||||| || || | |||||| || ||||||||||||||||| || ||||| ||||| || || | |||||| ||||| |
|
|
| T |
40327872 |
ccactacttacaaagatttcagacccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaa |
40327971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 480 - 777
Target Start/End: Complemental strand, 35135872 - 35135573
Alignment:
| Q |
480 |
tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt |
579 |
Q |
| |
|
||||||||| | |||||||||||||||||| || || ||||||| | || || || ||||||||||||||||||||| |||| || |||||||| | |
|
|
| T |
35135872 |
tgaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgacgggtttcattgcattttcttcaagcaatactggcacattgtcgga |
35135773 |
T |
|
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttc |
677 |
Q |
| |
|
||||||||||| | ||||| ||| |||| | ||| | ||||| ||| | ||||| |||||||||| ||||||| ||||||| ||||||||| | | |
|
|
| T |
35135772 |
gatgatattttcaaaatggtccatgcagcttaccatagtggttactttgatccggagatctcaaacactctcattgcgctcattccaaaaattgaaccac |
35135673 |
T |
|
| Q |
678 |
ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa |
777 |
Q |
| |
|
| | || || ||| |||| | |||||| || || | |||||| || ||||||||||||||||| || ||||| ||||| || || | |||||| ||||| |
|
|
| T |
35135672 |
ccactacttacaaagatttcatacccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaa |
35135573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 777
Target Start/End: Original strand, 19264911 - 19265209
Alignment:
| Q |
481 |
gaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtg |
580 |
Q |
| |
|
|||||||| | |||||||||||||||||| || || ||||||| | || ||||| |||||||||||||||||||| |||| || |||||||| | | |
|
|
| T |
19264911 |
gaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgatgggtttcattgcattttcttcaaacaatactggcacattgtcggag |
19265010 |
T |
|
| Q |
581 |
atgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttcc |
678 |
Q |
| |
|
||||||| || | ||||| ||| |||| | ||| | ||||| ||| | ||||| |||||||||| ||||||| ||||||| ||||||||| | || |
|
|
| T |
19265011 |
atgatatattcaaaatggtccatgcagcttaccatagtggttactttgatccggagatctcaaacactctcattgcgctcattccaaaaattgaaccacc |
19265110 |
T |
|
| Q |
679 |
tagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa |
777 |
Q |
| |
|
| || || || |||| |||||||| || || | |||||| || ||||||||||||||||| || ||||| ||||| || || | |||||| ||||| |
|
|
| T |
19265111 |
cactacttacaaggatttcagacccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaa |
19265209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 581
Target Start/End: Original strand, 16321950 - 16322044
Alignment:
| Q |
487 |
tttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtga |
581 |
Q |
| |
|
|||| |||||||||||| |||||||| || ||||| | | |||||||||||||||||||||||||| || |||| || ||||||||| |||| |
|
|
| T |
16321950 |
tttgctgccctcaactccatgaaaccctacaaagcacctggtcccgatggctttcattgcattttctttaaacaatactggcacattgttggtga |
16322044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 771
Target Start/End: Complemental strand, 23208522 - 23208229
Alignment:
| Q |
480 |
tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt |
579 |
Q |
| |
|
|||||| |||| ||||||||| || |||||||| || ||||||| | || || ||||| ||||| || |||||||| ||||||| || || ||| | |
|
|
| T |
23208522 |
tgaagtttttgttgccctcaattccatgaaaccatacaaagcccctggcccggacggcttccattgtatcttcttcaaacaatattggcatatagttgga |
23208423 |
T |
|
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaa--tcattgcactcattcaaaaaattgatcttc |
677 |
Q |
| |
|
|| || || || |||||||| || ||||||| || || ||||| ||| | ||||| || |||| || ||||||||||||||| ||||| || | | |
|
|
| T |
23208422 |
gacgacatcttccatatggtccaaacagcctttcacacgggttactttgatccggagatttcaagcaccctcattgcactcattcctaaaatcgaccccc |
23208323 |
T |
|
| Q |
678 |
ctagcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattct |
771 |
Q |
| |
|
| | |||||| ||| ||||||||||||||||||||| |||||||| |||||| |||||||| |||||| | |||||||||||||||| |||||| |
|
|
| T |
23208322 |
ccaccacatacaaagattttagacccatcagtctctgcaacataacctacaagattatcactaaagttcttgtgcatcgtctcagacctattct |
23208229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 297 - 403
Target Start/End: Complemental strand, 30909147 - 30909041
Alignment:
| Q |
297 |
attttgacaatttaggttgacgtaactcgtatgctatattactagttggagtttgttcttagaagtgttgatttgtgatttataaatgaatctgttatca |
396 |
Q |
| |
|
|||||| |||||| |||||||||||||| || | ||| |||||||||| |||| || | |||||||||||||||||||||||||||||| ||| | || |
|
|
| T |
30909147 |
attttggcaatttgggttgacgtaactcctaggttatcttactagttgtggtttttttcttgaagtgttgatttgtgatttataaatgaatgtgtcaaca |
30909048 |
T |
|
| Q |
397 |
ttaattt |
403 |
Q |
| |
|
||||||| |
|
|
| T |
30909047 |
ttaattt |
30909041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 30909529 - 30909459
Alignment:
| Q |
18 |
tttcttccttgtactattgtaatgcaaagcaagacaattgagaaaagattaactactttgctgctggccat |
88 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
30909529 |
tttcttccttgtgctattgtaatgcaaatcaagactattgagaaaagaccaactactctgctgctggccat |
30909459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 492 - 621
Target Start/End: Complemental strand, 16770605 - 16770476
Alignment:
| Q |
492 |
tgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatattttt |
591 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| | | | || ||||| || || |||||||| ||||| |||| || |||||| || | ||||||||||| |
|
|
| T |
16770605 |
tgcccttaactctatgaaaccttacaaagcaccaggtccggatggtttccaatgcatttttttcaaacaatactggcacattattggagatgatattttc |
16770506 |
T |
|
| Q |
592 |
catatggttcattcagccttccaaacaggt |
621 |
Q |
| |
|
||||||| ||||| || |||||||||||| |
|
|
| T |
16770505 |
aatatggtgcattcggctttccaaacaggt |
16770476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 30903067 - 30902969
Alignment:
| Q |
18 |
tttcttccttgtactattgtaatgcaaagcaagacaattgagaaaagattaactactttgctgctggcca---tgacaatgtagttaattatgcttatg |
113 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||| ||||||| ||| |||||| | | ||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
30903067 |
tttcttccttgtgctactgtaatgcaaaacaagactattgagattagactaactagtattgtgctggccatgttgacaatgtggttaattttgcttatg |
30902969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 30909246 - 30909188
Alignment:
| Q |
241 |
cattaccatagcattcgaaacattggcaatcatagacaaattactatgttaatgtgatt |
299 |
Q |
| |
|
||||||| ||| |||||||||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
30909246 |
cattacctgagcgttcgaaacattgacattcataggtaaattactatgttaatgtgatt |
30909188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 484 - 781
Target Start/End: Complemental strand, 38647831 - 38647532
Alignment:
| Q |
484 |
gtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatg |
583 |
Q |
| |
|
||||||| ||| || ||||| ||||||||||| ||||| | | || ||||| || ||||| || |||||||| ||||||| ||||| || | |||| |
|
|
| T |
38647831 |
gtgtttgctgcacttaactccatgaaaccttacaaagcacccggcccagatggtttccattgtatcttcttcaaacaatattggcacatagtcggagatg |
38647732 |
T |
|
| Q |
584 |
atatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgat-cttccta |
680 |
Q |
| |
|
| |||| |||||||| |||||||| || || |||||| ||||| | ||||| || ||||||| || ||||||||||||| ||||||||| | ||| | |
|
|
| T |
38647731 |
acatttaccatatggtccattcagcttttcacacaggtcattttgatccggagatttcaaacactcttattgcactcattccgaaaattgattcatccaa |
38647632 |
T |
|
| Q |
681 |
gcacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatat |
780 |
Q |
| |
|
||| || ||| | || |||||||| ||||||| ||||||||||||||| ||||| || |||||| | ||||| |||||||||| |||||| | |||||| |
|
|
| T |
38647631 |
-cacttacaaagacttcagacccataagtctctgcaacataatctacaagattattactaaagttcttgtgcaccgtctcagacctattctcaataatat |
38647533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 592 - 764
Target Start/End: Original strand, 23424107 - 23424281
Alignment:
| Q |
592 |
catatggttcattcagccttccaaacaggttatttttagccggacatctcaaacaatc--attgcactcattcaaaaaattgatcttcctagcacatata |
689 |
Q |
| |
|
|||||||| ||| |||||||||||||||| | ||| | ||||| || ||||||| || ||||||||||||| |||||| || || | ||| || | |
|
|
| T |
23424107 |
catatggtccataaagccttccaaacaggtaactttgatccggagatttcaaacactctcattgcactcattccaaaaatcgaaacccccaccacttaca |
23424206 |
T |
|
| Q |
690 |
aatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagac |
764 |
Q |
| |
|
|| ||||||||||||| ||||| | ||||||||||||||| |||||||| |||||| | |||||||||||||||| |
|
|
| T |
23424207 |
aagattttagacccataagtctatgcaacataatctacaagattatcactaaagttcttgtgcatcgtctcagac |
23424281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 667
Target Start/End: Original strand, 7813321 - 7813510
Alignment:
| Q |
480 |
tgaagtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagt |
579 |
Q |
| |
|
|||||| |||| | ||||||| |||||||||||||| ||||||| | |||| || || || ||||| || |||||||| | || || || |||||| | |
|
|
| T |
7813321 |
tgaagtttttgctaccctcaagtctatgaaaccttacaaagccccaggacctgacggtttccattgtatcttcttcaaacagtactggcatattgttggc |
7813420 |
T |
|
| Q |
580 |
gatgatatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaa--acaatcattgcactcattcaaaaa |
667 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||| | ||| | ||||||| || ||||||||||||||| |||| |
|
|
| T |
7813421 |
aatgatatttttcatatggtccaaacagccttccaaactggttattttgatccgaagatctcaagcactctcattgcactcattccaaaa |
7813510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 532 - 621
Target Start/End: Original strand, 23944564 - 23944653
Alignment:
| Q |
532 |
gatggctttcattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggttcattcagccttccaaacaggt |
621 |
Q |
| |
|
||||| ||||| || || ||||||||| |||| |||||||||||| | ||||||||||| | | ||||||| ||||||||||| |||||| |
|
|
| T |
23944564 |
gatggttttcaatgtatcttcttcaagcaatactgacacattgttggagatgatattttccgtttggttcactcagccttccatacaggt |
23944653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 701 - 781
Target Start/End: Original strand, 23944735 - 23944815
Alignment:
| Q |
701 |
cccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatatt |
781 |
Q |
| |
|
||||||||| | | ||| || ||||||||||| || || ||||||||||| || |||||||||| |||||||| ||||||| |
|
|
| T |
23944735 |
cccatcagtttatgcaatatcatctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatatt |
23944815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 484 - 777
Target Start/End: Complemental strand, 54478057 - 54477762
Alignment:
| Q |
484 |
gtgtttgatgccctcaactctatgaaaccttagaaagccctatgacccgatggctttcattgcattttcttcaagtaatattgacacattgttagtgatg |
583 |
Q |
| |
|
||||||| | |||| ||||||||||| || || |||||| | | || |||||||| || | ||| |||||||| ||||||| ||||||||| |||||| |
|
|
| T |
54478057 |
gtgtttgcttcccttaactctatgaagccctataaagcctcaggcccagatggcttccactacatcttcttcaaacaatattggcacattgttggtgatg |
54477958 |
T |
|
| Q |
584 |
atatttttcatatggttcattcagccttccaaacaggttatttttagccggacatctcaaaca--atcattgcactcattcaaaaaattgatcttcctag |
681 |
Q |
| |
|
|||| | ||| ||||| || |||| || |||| ||||| ||| | || || |||||||||| ||||||||||||||| | |||||| | || | |
|
|
| T |
54477957 |
atatctatcaaatggtccacacagcttttcaaatcggttactttgatccagagatctcaaacactctcattgcactcattcctataattgacccacccac |
54477858 |
T |
|
| Q |
682 |
cacatataaatattttagacccatcagtctctccaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaa |
777 |
Q |
| |
|
|| |||||| | || ||||||||||| || | || || |||||||||||||||||||| |||||||| || || || || | |||||||||||| |
|
|
| T |
54477857 |
tacttataaagacttcagacccatcagcctttgtaatatcatctacaaaattatcacaaaggttttggttcaccgactaaggcctattcttactaa |
54477762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 781
Target Start/End: Original strand, 33803716 - 33803775
Alignment:
| Q |
722 |
atctacaaaattatcacaaaagttttggtgcatcgtctcagacatattcttactaatatt |
781 |
Q |
| |
|
||||||||||| || || ||||||||||| || |||||||||| |||||||| ||||||| |
|
|
| T |
33803716 |
atctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatatt |
33803775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 599
Target Start/End: Original strand, 75467 - 75525
Alignment:
| Q |
541 |
cattgcattttcttcaagtaatattgacacattgttagtgatgatatttttcatatggt |
599 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||| ||||||||||||| || ||||| |
|
|
| T |
75467 |
cattgcattttcttcaaacaatactggcacattgttggtgatgatattttccaaatggt |
75525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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