View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13085_low_11 (Length: 378)
Name: NF13085_low_11
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 961413 - 961627
Alignment:
| Q |
37 |
gacaaatatattccttgtaagtttactttaaaaacacaannnnnnncattttaaaataacctaaattttaagagttatattaaatccaaatttagtatca |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
961413 |
gacaaatatattccttgtaagtttactttaaaaacacaatttttttcattttaaaataacctaaattttaagagttatattaaatccaaatttagtatca |
961512 |
T |
|
| Q |
137 |
caatatatcattgaattattcatcctaagttacttaccttctagaattcgttctatttcattttcaatttaaatatcgcaagtacaaattcgtactattg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
961513 |
caatatatcattgaattattcatcctaagttacttaccttctagaattcgttctatttcattttcaatttaaatatcgcaagtacaaattcgtactattg |
961612 |
T |
|
| Q |
237 |
aaataactccaaatt |
251 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
961613 |
aaataactccaaatt |
961627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 961699 - 961747
Alignment:
| Q |
323 |
gacaatctttgttacactatacttattcgacacgtattaatattcttgg |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
961699 |
gacaatctttgttacactatacttattcgacacgtattaatattattgg |
961747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University