View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13085_low_12 (Length: 367)

Name: NF13085_low_12
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13085_low_12
NF13085_low_12
[»] chr7 (1 HSPs)
chr7 (9-354)||(5969555-5969896)
[»] chr8 (4 HSPs)
chr8 (10-51)||(35851052-35851093)
chr8 (211-250)||(6851053-6851092)
chr8 (211-250)||(44156716-44156755)
chr8 (210-250)||(14342531-14342571)
[»] chr3 (2 HSPs)
chr3 (217-252)||(11621109-11621144)
chr3 (213-250)||(27837272-27837309)
[»] chr5 (1 HSPs)
chr5 (210-250)||(20501398-20501438)
[»] chr4 (2 HSPs)
chr4 (212-252)||(6170994-6171034)
chr4 (210-250)||(26250650-26250690)
[»] chr1 (1 HSPs)
chr1 (210-250)||(34750416-34750456)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 5969555 - 5969896
Alignment:
Q  9 gaagaaaattagagaggaaatttattattttcatcattgatttttgttattctagtactgttacaaaagtttatagagaaagtgagagatgaattgacaa 108  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  5969555 gaagtaaattagagaggaaatttattattttcatcattgatttatgttattctagtactcttgcaaaagtttatagagaaagtgagagatgcattgacaa 5969654  T
Q  109 tgtaaatagnnnnnnnacattgacgtttacccaacatttgtttgtttaataagaactcaaatttataagagtatatatgtatgctcaccaagaacgttca 208  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||    
T  5969655 tgtaaatagtttt---acattgacgtttacccaacatttgtttgtttaataagaactcaaatttataagggtatatatgtatgctcaccagaagcgttca 5969751  T
Q  209 tgtgagcataactcaattgttagagacattgcataatttatgtattcatttaaatgtgtgagtttcagtcactagactattaaaccnnnnnnnntaaatt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |||         |||||    
T  5969752 tgtgagcataactcaattgttagagacattgcataatttatgtattcatttaaatgtgtgagttccaatcactagactactagaccaaaaaaag-aaatt 5969850  T
Q  309 ggcagcaaaaatttcacgcatattaaacgacgagaaaaaggtattg 354  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  5969851 ggcagcaaaaatttcacgcatattaaacgacaagaaaaaggtattg 5969896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 35851093 - 35851052
Alignment:
Q  10 aagaaaattagagaggaaatttattattttcatcattgattt 51  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  35851093 aagaaaattagagaggaattttatttttttcatcattgattt 35851052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 6851092 - 6851053
Alignment:
Q  211 tgagcataactcaattgttagagacattgcataatttatg 250  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  6851092 tgagcttaactcaattggtagagacattgcataatttatg 6851053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 44156716 - 44156755
Alignment:
Q  211 tgagcataactcaattgttagagacattgcataatttatg 250  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  44156716 tgagcttaactcaattggtagagacattgcataatttatg 44156755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 14342571 - 14342531
Alignment:
Q  210 gtgagcataactcaattgttagagacattgcataatttatg 250  Q
    |||||| ||||||| ||| ||||||||||||||||||||||    
T  14342571 gtgagcttaactcagttggtagagacattgcataatttatg 14342531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 252
Target Start/End: Complemental strand, 11621144 - 11621109
Alignment:
Q  217 taactcaattgttagagacattgcataatttatgta 252  Q
    ||||||||||||||||||||||||||||| ||||||    
T  11621144 taactcaattgttagagacattgcataatatatgta 11621109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 27837272 - 27837309
Alignment:
Q  213 agcataactcaattgttagagacattgcataatttatg 250  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  27837272 agcataactcaattgatagagacattgtataatttatg 27837309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 20501398 - 20501438
Alignment:
Q  210 gtgagcataactcaattgttagagacattgcataatttatg 250  Q
    |||||| ||||||| ||| ||||||||||||||||||||||    
T  20501398 gtgagcttaactcagttggtagagacattgcataatttatg 20501438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 6171034 - 6170994
Alignment:
Q  212 gagcataactcaattgttagagacattgcataatttatgta 252  Q
    |||| ||||||||||| ||| ||||||||||||||||||||    
T  6171034 gagcttaactcaattggtagggacattgcataatttatgta 6170994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 26250650 - 26250690
Alignment:
Q  210 gtgagcataactcaattgttagagacattgcataatttatg 250  Q
    |||||||||||||| ||| ||| ||||||||||||||||||    
T  26250650 gtgagcataactcagttggtagggacattgcataatttatg 26250690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 34750456 - 34750416
Alignment:
Q  210 gtgagcataactcaattgttagagacattgcataatttatg 250  Q
    |||||||||||||||||| ||| || |||||||||||||||    
T  34750456 gtgagcataactcaattggtagggatattgcataatttatg 34750416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University