View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_13 (Length: 357)
Name: NF13085_low_13
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 47991530 - 47991867
Alignment:
| Q |
3 |
aaaaacattttttaacagattgagaaatgaaactataccagattaagaagagaagcatgaccccaactgcatcttccccagtcacatttctgaggaggcc |
102 |
Q |
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| T |
47991530 |
aaaaacattttttaacagattgagaaatgaaactataccagattaagaagagaagcatgaccccaactgcatcttccccagtcacatttctgaggaggcc |
47991629 |
T |
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| Q |
103 |
accaatcaagagttgcacaaacaaaatcattatcaatccttccaataaaagctttgccatgaattacaacaacccctttcacagctgaatcatttcctaa |
202 |
Q |
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| T |
47991630 |
accaatcaagagttgcacaaacaaaatcattatcaatccttccaataaaagctttgccatgaattacaacaacccctttcacagctgaatcatttcctaa |
47991729 |
T |
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| Q |
203 |
tcctatgcaattcactccaatgaagctgaaactgaagcttaccaagtacatccnnnnnnncatacccagaagcnnnnnnngataacccatttcctaaaat |
302 |
Q |
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| T |
47991730 |
tcctatgcaattcactccaatgaagctgaaactgaagcttaccaagtacatccaaaaaaacatacccagaagctttttttgataacccatttcctaaaat |
47991829 |
T |
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| Q |
303 |
caattaaagttaagatctttatggttttttcataaatg |
340 |
Q |
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| T |
47991830 |
caattaaagttaagatctttatggttttttcataaatg |
47991867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 22879619 - 22879730
Alignment:
| Q |
37 |
ataccagattaagaagagaagcatgaccccaactgcatcttccccagtcacatttctgaggaggccaccaatcaagagttgcacaaacaaaatcattatc |
136 |
Q |
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|||||||||| |||||||||||| |||||||||| ||| | || | |||||||||||||||||||||||||| | ||||||||||| |||||||| ||| |
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| T |
22879619 |
ataccagattgagaagagaagcaagaccccaactacatgtaccataatcacatttctgaggaggccaccaatccaaagttgcacaaataaaatcatcatc |
22879718 |
T |
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| Q |
137 |
aatccttccaat |
148 |
Q |
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| T |
22879719 |
aatatttccaat |
22879730 |
T |
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