View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13085_low_15 (Length: 340)

Name: NF13085_low_15
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13085_low_15
NF13085_low_15
[»] chr1 (14 HSPs)
chr1 (73-295)||(9088508-9088730)
chr1 (14-81)||(9087620-9087687)
chr1 (220-323)||(16498713-16498816)
chr1 (220-305)||(17721806-17721891)
chr1 (19-89)||(9126760-9126825)
chr1 (279-323)||(9088744-9088788)
chr1 (229-305)||(27178977-27179053)
chr1 (229-305)||(27194978-27195054)
chr1 (229-305)||(33498426-33498502)
chr1 (229-280)||(33492969-33493020)
chr1 (229-305)||(15716700-15716776)
chr1 (229-305)||(26711484-26711560)
chr1 (246-312)||(3343873-3343939)
chr1 (229-305)||(15711119-15711195)
[»] scaffold0121 (1 HSPs)
scaffold0121 (217-305)||(11433-11521)
[»] chr7 (9 HSPs)
chr7 (217-305)||(25499140-25499228)
chr7 (217-305)||(25493903-25493991)
chr7 (229-305)||(32148553-32148629)
chr7 (246-305)||(557879-557938)
chr7 (246-305)||(576062-576121)
chr7 (229-303)||(16648499-16648573)
chr7 (229-303)||(17622860-17622934)
chr7 (229-305)||(42167628-42167704)
chr7 (229-287)||(42208969-42209027)
[»] chr3 (15 HSPs)
chr3 (229-305)||(9730320-9730396)
chr3 (229-305)||(13980663-13980739)
chr3 (229-305)||(40800645-40800721)
chr3 (246-305)||(2174225-2174284)
chr3 (246-305)||(13990925-13990984)
chr3 (246-287)||(34578842-34578883)
chr3 (229-305)||(3110516-3110592)
chr3 (229-305)||(3112133-3112209)
chr3 (229-305)||(23338905-23338981)
chr3 (229-305)||(23344452-23344528)
chr3 (246-305)||(2168658-2168717)
chr3 (246-305)||(13985353-13985412)
chr3 (246-305)||(40802569-40802628)
chr3 (246-305)||(48216343-48216402)
chr3 (247-280)||(15036897-15036930)
[»] chr2 (14 HSPs)
chr2 (229-305)||(14898859-14898935)
chr2 (229-305)||(630807-630883)
chr2 (229-305)||(636358-636434)
chr2 (229-305)||(7909970-7910046)
chr2 (229-305)||(7917425-7917501)
chr2 (229-305)||(14893306-14893382)
chr2 (229-305)||(22430424-22430500)
chr2 (229-305)||(22436018-22436094)
chr2 (229-305)||(26694229-26694305)
chr2 (229-305)||(26702325-26702401)
chr2 (229-305)||(43777067-43777143)
chr2 (229-305)||(22425054-22425130)
chr2 (220-325)||(19052331-19052436)
chr2 (246-287)||(1519239-1519280)
[»] scaffold0169 (2 HSPs)
scaffold0169 (229-305)||(8772-8848)
scaffold0169 (229-305)||(11034-11110)
[»] scaffold0124 (1 HSPs)
scaffold0124 (217-305)||(39528-39616)
[»] chr4 (6 HSPs)
chr4 (229-305)||(20192599-20192675)
chr4 (229-305)||(20197963-20198039)
chr4 (229-305)||(6156627-6156703)
chr4 (229-305)||(6162324-6162400)
chr4 (246-305)||(53982187-53982246)
chr4 (251-325)||(12733905-12733979)
[»] chr5 (4 HSPs)
chr5 (229-312)||(34647934-34648017)
chr5 (229-305)||(28366988-28367064)
chr5 (229-305)||(28375728-28375804)
chr5 (229-287)||(1536580-1536638)
[»] chr8 (3 HSPs)
chr8 (229-305)||(12756169-12756245)
chr8 (229-305)||(24052041-24052117)
chr8 (246-305)||(41043572-41043631)
[»] chr6 (3 HSPs)
chr6 (246-305)||(14856030-14856089)
chr6 (246-305)||(26680663-26680722)
chr6 (246-305)||(14847172-14847231)
[»] scaffold0004 (1 HSPs)
scaffold0004 (229-305)||(350999-351075)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 73 - 295
Target Start/End: Original strand, 9088508 - 9088730
Alignment:
Q  73 taaaaaatatggcaattgaccacgtggtccaaaattacaggcgtccaaattttttaaaaagtataaatgatgatacggttatgaatattataagtgaatg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9088508 taaaaaatatggcaattgaccacgtggtccaaaattacaggcgtccaaattttttaaaaagtataaataatgatacggttatgaatattataagtgaatg 9088607  T
Q  173 tcggattataaaatcataatattagtttattgtgtcgtattgtgcctaagtcattggtgcttgttccctaaaccattatatttctctataaatagagctt 272  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||    
T  9088608 tcgggttataaaatcataatattagtttattgtgtcatattgtgcctaagtcgttggtgtttgttccccaaatcattatatttctctataaatagagctt 9088707  T
Q  273 atatgtaatctaattgtacacaa 295  Q
    |||||||||||||||||||||||    
T  9088708 atatgtaatctaattgtacacaa 9088730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 9087620 - 9087687
Alignment:
Q  14 aaaaatatgtgctcctttgtaaaaagtgcattgtgctgtggtcgtgatccgtgtgaaaataaaaaata 81  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9087620 aaaaatatgtgctcctttgtaaaaagtacattgtgctgtggtcgtgatccgtgtgaaaataaaaaata 9087687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 16498816 - 16498713
Alignment:
Q  220 aagtcattggtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaatattagaatatttctc 319  Q
    ||||||||||||||||||  | ||  |||| ||| ||||||||||||||||| |||||||| ||||||| | || ||||||||||| |||||||||||||    
T  16498816 aagtcattggtgcttgttttccaagtcattgtatctctctataaatagagctcatatgtaacctaattgcataccacaagagaataatagaatatttctc 16498717  T
Q  320 tctc 323  Q
    ||||    
T  16498716 tctc 16498713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 17721806 - 17721891
Alignment:
Q  220 aagtcattggtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||||||||||| |||||||| ||  ||||||||||||||||||||||||||  ||||||| |||||||||||  |||||||||||    
T  17721806 aagtcattggtgtttgttccccaagtcattatatttctctataaatagagctcgtatgtaacctaattgtacatcacaagagaata 17721891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 9126760 - 9126825
Alignment:
Q  19 tatgtgctcctttgtaaaaagtgcattgtgctgtggtcgtgatccgtgtgaaaataaaaaatatggcaatt 89  Q
    ||||||||||||| ||||||||||||||||||     |||||||||||| |||||||||||||||||||||    
T  9126760 tatgtgctcctttataaaaagtgcattgtgct-----cgtgatccgtgtaaaaataaaaaatatggcaatt 9126825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 9088744 - 9088788
Alignment:
Q  279 aatctaattgtacacaacaagagaatattagaatatttctctctc 323  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  9088744 aatctaattgtacacaacaagagaatattagagtatttctctctc 9088788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 27179053 - 27178977
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  27179053 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 27178977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 27195054 - 27194978
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  27195054 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 27194978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 33498502 - 33498426
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||| |||||||||||||| |||||| ||||  |||||||||||    
T  33498502 gtgcttgctccccaagtcattgtatttctctataaatggagcttatatgtaacctaattatacatcacaagagaata 33498426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 33493020 - 33492969
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaa 280  Q
    ||||||| |||||||  |||| ||||||||||||||||||||||||||||||    
T  33493020 gtgcttgctccctaagtcattgtatttctctataaatagagcttatatgtaa 33492969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 15716700 - 15716776
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| ||||||||  ||||| ||||  |||||||||||    
T  15716700 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacgtaattatacatcacaagagaata 15716776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 26711560 - 26711484
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| ||||||  |||  |||||||||||    
T  26711560 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattagacatcacaagagaata 26711484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 3343939 - 3343873
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaatattagaat 312  Q
    |||| ||||||| |||||||||| ||||||||||| |||||| || | ||||||| |||| ||||||    
T  3343939 cattgtatttctatataaatagaacttatatgtaacctaattatatataacaagaaaataatagaat 3343873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 15711119 - 15711195
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||| ||||||||||||| ||||||||  ||||| ||||  |||||||||||    
T  15711119 gtgcttgctccccaagtcattgtatttctttataaatagagctcatatgtaacgtaattatacatcacaagagaata 15711195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 11521 - 11433
Alignment:
Q  217 cctaagtcattggtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||||||||||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| ||||| ||||| |  |||||||||    
T  11521 cctaagtcattggtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaata 11433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 25499140 - 25499228
Alignment:
Q  217 cctaagtcattggtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||||||||||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||  ||||  |||||||||||    
T  25499140 cctaagtcattggtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatgatacatcacaagagaata 25499228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 25493903 - 25493991
Alignment:
Q  217 cctaagtcattggtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||||||||||||||| |||| ||  |||| ||||||||||||||||||||| ||||||||  ||||  ||||  |||||||||||    
T  25493903 cctaagtcattggtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacataatgatacatcacaagagaata 25493991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 32148553 - 32148629
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| |||||||||||||||||||||||||||||| |||||| ||||  |||||| ||||    
T  32148553 gtgcttgctcccaaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagaaaata 32148629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 557938 - 557879
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||| | |||||||| |||||||||||  |||||||||||    
T  557938 cattgtatttctctataaatagagttcatatgtaacctaattgtacatcacaagagaata 557879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 576121 - 576062
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||| | |||||||| |||||||||||  |||||||||||    
T  576121 cattgtatttctctataaatagagttcatatgtaacctaattgtacatcacaagagaata 576062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 16648499 - 16648573
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaa 303  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||    
T  16648499 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaa 16648573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 17622860 - 17622934
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaa 303  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||    
T  17622860 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaa 17622934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 42167704 - 42167628
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||| ||||    
T  42167704 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagaaaata 42167628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 42208969 - 42209027
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaatt 287  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| ||||||    
T  42208969 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatt 42209027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 9730396 - 9730320
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||| |||| ||||||||||||||||||||| ||||||||||||||| ||||  |||||||||||    
T  9730396 gtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaatctaattatacatgacaagagaata 9730320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 13980739 - 13980663
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||    
T  13980739 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaatctaattgtacataccaagagaata 13980663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 40800721 - 40800645
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| |||| ||||||||||||    
T  40800721 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacataacaagagaata 40800645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 2174284 - 2174225
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  2174284 cattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 2174225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 13990925 - 13990984
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  13990925 cattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 13990984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 34578883 - 34578842
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaatt 287  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  34578883 cattgtatttctctataaatagagcttatatgtaacctaatt 34578842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 3110592 - 3110516
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| ||||||||  ||||| ||||  |||||||||||    
T  3110592 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaata 3110516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 3112209 - 3112133
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| ||||||||  ||||| ||||  |||||||||||    
T  3112209 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaata 3112133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 23338905 - 23338981
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| || |  |||||||||||    
T  23338905 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatagatcacaagagaata 23338981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 23344452 - 23344528
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| || |  |||||||||||    
T  23344452 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatagatcacaagagaata 23344528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 2168717 - 2168658
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||  |||||| ||||  |||||||||||    
T  2168717 cattgtatttctctataaatagagctcatatgtagcctaattatacatcacaagagaata 2168658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 13985353 - 13985412
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||| | |||||||| |||||| ||||  |||||||||||    
T  13985353 cattgtatttctctataaatagagatcatatgtaacctaattatacatcacaagagaata 13985412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 40802628 - 40802569
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| ||||||||  ||||| ||||  |||||||||||    
T  40802628 cattgtatttctctataaatagagctcatatgtaacttaattatacatcacaagagaata 40802569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 48216402 - 48216343
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||| |||||| || |  |||||||||||    
T  48216402 cattgtatttctctataaatagagctcatatgtaacctaattatatatcacaagagaata 48216343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 15036897 - 15036930
Alignment:
Q  247 attatatttctctataaatagagcttatatgtaa 280  Q
    ||||||||| ||||||||||||||||||||||||    
T  15036897 attatatttgtctataaatagagcttatatgtaa 15036930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 14898859 - 14898935
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||||||| |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  14898859 gtgcttgctccctaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 14898935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 630807 - 630883
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  630807 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 630883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 636358 - 636434
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  636358 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 636434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 7910046 - 7909970
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  7910046 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 7909970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 7917501 - 7917425
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  7917501 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 7917425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 14893306 - 14893382
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  14893306 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 14893382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 22430424 - 22430500
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  22430424 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 22430500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 22436018 - 22436094
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  22436018 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 22436094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 26694229 - 26694305
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  26694229 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 26694305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 26702325 - 26702401
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  26702325 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 26702401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 43777067 - 43777143
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  43777067 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 43777143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 22425054 - 22425130
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| | |||| ||||  |||||||||||    
T  22425054 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacccaattatacatcacaagagaata 22425130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 325
Target Start/End: Complemental strand, 19052436 - 19052331
Alignment:
Q  220 aagtcattggtgcttgttccctaaaccattatatttctctataaatagagcttata-tgtaatctaattgtacacaacaagagaatattagaatatttct 318  Q
    ||||||||| |  |||||||  ||| |||| ||||||||||||||||||||| ||| | ||| ||||||||| || | ||||| ||| |||||||||| |    
T  19052436 aagtcattgatatttgttcctcaaatcattgtatttctctataaatagagctcatactataacctaattgtaaacca-aagaggataatagaatattttt 19052338  T
Q  319 ctctcct 325  Q
    |||||||    
T  19052337 ctctcct 19052331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 1519239 - 1519280
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaatt 287  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  1519239 cattgtatttctctataaatagagctcatatgtaacctaatt 1519280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 8772 - 8848
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||    
T  8772 gtgcttgctccccaagtcattgtatttctctataaatagagattatatgtaatctaattggatacaccaagagaata 8848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 11034 - 11110
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||| ||| ||||||| | | | ||||||||||    
T  11034 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatataacctaattggatataccaagagaata 11110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 39528 - 39616
Alignment:
Q  217 cctaagtcattggtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||||||||||||||| |||  ||  |||| ||||||||||||||||||||| |||||||| ||||| ||||| |  |||||||||    
T  39528 cctaagtcattggtgcttgctcctcaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaata 39616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 20192675 - 20192599
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| |||||||||||||||||||||||||||||| |||||| ||||  |||||||||||    
T  20192675 gtgcttgctcccaaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagagaata 20192599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 20198039 - 20197963
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| |||||||||||||||||||||||||||||| |||||| ||||  |||||||||||    
T  20198039 gtgcttgctcccaaagtcattgtatttctctataaatagagcttatatgtaacctaattatacatcacaagagaata 20197963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 6156627 - 6156703
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  6156627 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 6156703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 6162324 - 6162400
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  6162324 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 6162400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 53982187 - 53982246
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  53982187 cattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 53982246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 12733979 - 12733905
Alignment:
Q  251 tatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaatattagaatatttctctctcct 325  Q
    ||||||||||||||||||||| | |||||| |||||||   |  ||||||||||| |||||||||| ||||||||    
T  12733979 tatttctctataaatagagctcacatgtaacctaattggttatcacaagagaataatagaatatttatctctcct 12733905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 34648017 - 34647934
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaatattagaat 312  Q
    ||||||| |||| ||| |||| ||||||| ||||||| ||||| |||||||| |||||||||||  ||||||||||| ||||||    
T  34648017 gtgcttgctccccaaatcattgtatttctgtataaattgagctcatatgtaacctaattgtacatcacaagagaataatagaat 34647934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 28367064 - 28366988
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  28367064 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 28366988  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 28375804 - 28375728
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  28375804 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 28375728  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 1536638 - 1536580
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaatt 287  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| ||||||    
T  1536638 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatt 1536580  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 12756245 - 12756169
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  12756245 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 12756169  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 24052117 - 24052041
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  24052117 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 24052041  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 41043572 - 41043631
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  41043572 cattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 41043631  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 14856030 - 14856089
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  14856030 cattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 14856089  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 26680663 - 26680722
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  26680663 cattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 26680722  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 14847172 - 14847231
Alignment:
Q  246 cattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    |||| |||||||||||||||||| || |||||||| |||||| ||||  |||||||||||    
T  14847172 cattgtatttctctataaatagaactcatatgtaacctaattatacatcacaagagaata 14847231  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 351075 - 350999
Alignment:
Q  229 gtgcttgttccctaaaccattatatttctctataaatagagcttatatgtaatctaattgtacacaacaagagaata 305  Q
    ||||||| |||| ||  |||| ||||||||||||||||||||| |||||||| |||||| ||||  | |||||||||    
T  351075 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcataagagaata 350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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