View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_16 (Length: 304)
Name: NF13085_low_16
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_16 |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 61 - 304
Target Start/End: Original strand, 45047538 - 45047785
Alignment:
| Q |
61 |
tacatctacaaatccaattccaataataattaacatgtaagtaaacactaatagagatttatcacaaaaatccnnnnnnn----ccccttctaccacaat |
156 |
Q |
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| T |
45047538 |
tacatctacaaatccaattccaataataattaacatgtaagtaaacactaatagagatttatcacaaaaatcctttttttttttccccttctaccacaat |
45047637 |
T |
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| Q |
157 |
tgtatagaccaagtacatgaattaactgataaaatttataacaatgaataggaacaaaatgagnnnnnnnctccagataatatcttaatcttaatcttaa |
256 |
Q |
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| T |
45047638 |
tgtatagaccaagtacatgaattaactgataaaatttataacaatgaataggaataaaatgagtttttttctccagataatatcttaatcttaatcttaa |
45047737 |
T |
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| Q |
257 |
aaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
304 |
Q |
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| T |
45047738 |
aaatttgccccaatctaatgtgtcaaaattctaagcctcctacaataa |
45047785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 45043775 - 45043872
Alignment:
| Q |
9 |
tattgccccagaaattcgaatgataccacgagttgcatcaatggttgtaggatacatctacaaatccaattccaataata--attaacatgtaagtaaa |
105 |
Q |
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| T |
45043775 |
tattgctccagaaattcgaataataccgtgtgttgcatcgatagtaa-aggaaacatctacaaagccaattccaataatatgattaaaatgtaagtaaa |
45043872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 25571909 - 25571958
Alignment:
| Q |
255 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
304 |
Q |
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| T |
25571909 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
25571958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 26006377 - 26006426
Alignment:
| Q |
255 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
304 |
Q |
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| T |
26006377 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
26006426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 26125142 - 26125191
Alignment:
| Q |
255 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
304 |
Q |
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| T |
26125142 |
aaaattttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
26125191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 23362962 - 23363011
Alignment:
| Q |
255 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
304 |
Q |
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| T |
23362962 |
aaaaaattgcaccaatccaatgtgtcaaaattctaagcctcctacaataa |
23363011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 38345956 - 38345862
Alignment:
| Q |
9 |
tattgccccagaaattcgaatgataccacgagttgcatcaatggttgtaggatacatctacaaatccaattccaataataattaacatgtaagtaa |
104 |
Q |
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| T |
38345956 |
tattgcaccagaaattcgaataataccatgtgttgcatcaat-gttgaatgatacatctacaggtccaattccaacaataacgaaaatgtaagtaa |
38345862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 38358300 - 38358225
Alignment:
| Q |
15 |
cccagaaattcgaatgataccacgagttgcatcaatggttgtaggatacatctacaaatccaattccaataataatt |
91 |
Q |
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| T |
38358300 |
cccataaatttgaatgataccatgagttgcattaatgat-gtaggatacatctgcaaatccgattctactaataatt |
38358225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 31606053 - 31606102
Alignment:
| Q |
255 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
304 |
Q |
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| T |
31606053 |
aaaaatttgcttcaatccaatgtgtcaaaattctaagccacctacaataa |
31606102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 12633083 - 12633034
Alignment:
| Q |
255 |
aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataa |
304 |
Q |
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| T |
12633083 |
aaaaatttgcttcaatctaatgtgtcaaaattctaagccacctacaataa |
12633034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 296
Target Start/End: Original strand, 2775810 - 2775840
Alignment:
| Q |
266 |
ccaatccaatgtgtcaaaattctaagcctcc |
296 |
Q |
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| T |
2775810 |
ccaatccaatgtgtcaaaattctaagcctcc |
2775840 |
T |
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