View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_17 (Length: 301)
Name: NF13085_low_17
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 35025524 - 35025292
Alignment:
| Q |
1 |
agagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35025524 |
agagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctggcaaatttttaagaccgaatcttaccatttccc |
35025425 |
T |
|
| Q |
101 |
attagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35025424 |
attagtttaattacaagtccatcacaatattgcatcttatcactcattagcttaaacaagttcttattataaaagccaataacatctttaatggtcggcc |
35025325 |
T |
|
| Q |
200 |
tccttcgtggatccttctcctgctgtcatagca |
232 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
35025324 |
tccttcgttgatccttctcctgctgtcatagca |
35025292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 37851886 - 37851668
Alignment:
| Q |
1 |
agagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttccc |
100 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| || | || ||||| | || ||||||||||||||||| |
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| T |
37851886 |
agagggacggaagatcaaactagaccaagcataggttatttttggaacaactagattcgctatgccaaaaacttttttatactgaatcttaccatttccc |
37851787 |
T |
|
| Q |
101 |
attagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcc |
199 |
Q |
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|| |||| | |||||||||||||| ||||||||||| |||| ||| | |||||||| ||||||||||| |||||| |||||| |||| ||||| | || |
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| T |
37851786 |
atcagttccactacaagtccatcaccatattgcacctcatcatacctcatcttaaacaggttcttattataaaagcctataacaactttcatggttgtcc |
37851687 |
T |
|
| Q |
200 |
tccttcgtggatccttctc |
218 |
Q |
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|| |||||||||||||||| |
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| T |
37851686 |
tctttcgtggatccttctc |
37851668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 37838557 - 37838339
Alignment:
| Q |
1 |
agagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttccc |
100 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||||| ||| |||||||||| ||||| |||| |||| || | | | |||||||||||| |
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| T |
37838557 |
agagggacggaagatcaaaattggccaagcataggttatttttggaagaactagattcaatacgccaacaaccttttgagccagcaatttaccatttccc |
37838458 |
T |
|
| Q |
101 |
attagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattataaa-gccaataacatctttaatggtcggcc |
199 |
Q |
| |
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|| ||||||||| |||||| || |||||| || | ||||| |||||||||||||| || |||||||||| | ||||||||||||| |||||||||| |
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| T |
37838457 |
atcagtttaattgaaagtcctataccatattgaacttcatcacaccttagcttaaacaggtagttattataaaagtcaataacatctttcatggtcggcc |
37838358 |
T |
|
| Q |
200 |
tccttcgtggatccttctc |
218 |
Q |
| |
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||||||||||||||||||| |
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| T |
37838357 |
tccttcgtggatccttctc |
37838339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 37833034 - 37832816
Alignment:
| Q |
1 |
agagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttccc |
100 |
Q |
| |
|
|||||||| |||| ||||| | |||||||||| |||||||| ||| || |||| ||||| ||||| |||||| |||| ||||||||| |||||| |
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| T |
37833034 |
agagggaatgaaggtcaaatgacgccaagcataagttatttttggaagaattagagcagctaccctgaccaattttacagactcaatcttaccgtttccc |
37832935 |
T |
|
| Q |
101 |
attagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttatt-ataaagccaataacatctttaatggtcggcc |
199 |
Q |
| |
|
|| ||||||||| ||||||||| | |||||| |||| ||||| ||| |||||||||||||| ||||| | ||| | ||||||| |||| |||||||||| |
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| T |
37832934 |
atcagtttaattgtaagtccatcgccatattgaacctcatcacacctcagcttaaacaagttgttattaaaaaaacgaataacacctttcatggtcggcc |
37832835 |
T |
|
| Q |
200 |
tccttcgtggatccttctc |
218 |
Q |
| |
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| ||||||||||||||| |
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| T |
37832834 |
tatctcgtggatccttctc |
37832816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 36867238 - 36867020
Alignment:
| Q |
1 |
agagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccatttccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||| |||| | ||||||| |||| |||||||||||||||| |
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| T |
36867238 |
agagggaaggaagatcaaactaggccaaacatagtttatttttggaacagctagattcgctatgctggcgaatttttcagacaaaatcttaccatttccc |
36867139 |
T |
|
| Q |
101 |
attagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||| ||||||||||||| ||||| |||| |
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| T |
36867138 |
attagtttaattacaagtccatcacaatatttcaccttatcacacctcagcttaaacaagttcgtattataaaaggcaataacatctttcatggttggcc |
36867039 |
T |
|
| Q |
200 |
tccttcgtggatccttctc |
218 |
Q |
| |
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||||||||||||||||||| |
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| T |
36867038 |
tccttcgtggatccttctc |
36867020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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