View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13085_low_18 (Length: 299)
Name: NF13085_low_18
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 21114576 - 21114306
Alignment:
| Q |
13 |
aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaatcagtcaaagatccatcattacggtatatatggtttggtcacttaattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21114576 |
aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaattagtcaaagatccatcattacggtaaatatggtttggtcacttaattt |
21114477 |
T |
|
| Q |
113 |
cttgatgacaaagaaacatgttagtgcttgtcatgtacaaaatatatgtgaaaaataca-ggtatagtgtcaaattttagtgtcagtctcagattagtga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
21114476 |
cttgatgacaaagaaacatgttagtgcttgtcatgtacaaaatatatgtgaaaaatacagggtatagtgtcaaattttagtctcaggctcagattagtga |
21114377 |
T |
|
| Q |
212 |
aaaatacaaaaggccaactttgtagttggaataagttgtctaatttaagcaataagattgagccttgtttg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21114376 |
aaaatacaaaaggccaactttgtagttggaataagttgtctaatttaagcaataagattgagccttgtttg |
21114306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 21122003 - 21121935
Alignment:
| Q |
13 |
aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaatcagtcaaagatccatca |
81 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| | |||| ||| |||||| |||||||||||| |||| |
|
|
| T |
21122003 |
aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatca |
21121935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University