View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_2 (Length: 668)
Name: NF13085_low_2
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Complemental strand, 29730148 - 29729501
Alignment:
| Q |
1 |
ttgctattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatct |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29730148 |
ttgcttttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatca |
29730049 |
T |
|
| Q |
101 |
tcttgaatctattgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattggcaattgcaaaaacaatatctggtttacgccattttaaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
29730048 |
tcttgaatcttttgatctgcaaagtcccacatctcttgttggcaagtgtaatgaagcattagcaattgcaaaaacaatatctggtttacgccatcttaaa |
29729949 |
T |
|
| Q |
201 |
ttgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgaactgcaaagttccaggtattat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29729948 |
ttgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgatctgcaaagttccaggtattat |
29729849 |
T |
|
| Q |
301 |
tattccaaatccaatccaattgtttacttaaagggtgctgcgagcaaattaaagaattccgacctccaattctctatgattttgctttagctaaaaggac |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||| |
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|
| T |
29729848 |
tattccaaatccaatccaa--gtttacttaaatggtgctgcgagcaaattaaagatttccgacctccaattctctatgattctgatttagctataaggac |
29729751 |
T |
|
| Q |
401 |
atttttgttaagatatatatgctaattattattggcagtattagataaatattgattatgattatgattgatgtcttggcatgatttcttcccaaatgtt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29729750 |
atttttgttaagatatatatgctaattatgattggcagtattagataaatattgattatgattatgattgatgtcttggcatgatttcttctcaaatgtt |
29729651 |
T |
|
| Q |
501 |
gatgatgttgctttgaagtaattgtgttgcctgcatctgaaagtgtatttgaatttctcaagaacctagtatgcaagcacaaggtttgcatgttttatta |
600 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29729650 |
gatgatgttgctttgaagtatttgtgttgcctgcatctgaaagtgtatttgaatttctcaagaacctagtatgcaagctcaaggtttgcatgttttatta |
29729551 |
T |
|
| Q |
601 |
ataagattatctttattatttttattcttgaatgatttgtggtttttgat |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729550 |
ataagattatctttattatttttattcttgaatgatttgtggtttttgat |
29729501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 29713328 - 29713433
Alignment:
| Q |
5 |
tattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcttctt |
104 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||||| |||||||| ||| | ||||| || |||||| ||||||||||||| ||||||| ||||||| |
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|
| T |
29713328 |
tattgcaaaaacaatgtctgggttatgccatcttaaattgaatggattttttagtaactgtggtggattggttgctattcttgatggctgccctcttctt |
29713427 |
T |
|
| Q |
105 |
gaatct |
110 |
Q |
| |
|
|||||| |
|
|
| T |
29713428 |
gaatct |
29713433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 276
Target Start/End: Original strand, 29713329 - 29713436
Alignment:
| Q |
165 |
attgcaaaaacaatatctggtttacgccattttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctctt |
264 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| |||||||||||||| || | | ||||| || ||||||| ||||||||||||| ||||||||||| |
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|
| T |
29713329 |
attgcaaaaacaatgtctgggttatgccatcttaaattgaatggattt----tttagtaactgtggtggattggttgctattcttgatggctgccctctt |
29713424 |
T |
|
| Q |
265 |
cttgaatctctt |
276 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29713425 |
cttgaatctctt |
29713436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 29752629 - 29752744
Alignment:
| Q |
5 |
tattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcttctt |
104 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||| || |||| | | ||||||||| || ||| ||||||||||||||||| |||| ||||| |
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|
| T |
29752629 |
tattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattatggcttaactatgatgaattgcttgctattcttgacggttgcccgcttctc |
29752728 |
T |
|
| Q |
105 |
gaatctattgatctgc |
120 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
29752729 |
gaatctcttgatctgc |
29752744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 29752681 - 29752744
Alignment:
| Q |
220 |
cttaactatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgaactgc |
283 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| | ||||| ||||| ||||||||||| |||| |
|
|
| T |
29752681 |
cttaactatgatgaattgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgc |
29752744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 623
Target Start/End: Original strand, 29752983 - 29753068
Alignment:
| Q |
540 |
aaagtgtatttgaatttctcaagaacctagtatgcaagcacaa--ggtttgcatgttttattaataagattatctttattattttt |
623 |
Q |
| |
|
||||||| |||||| ||||||||| || |||| |||||| | |||||||||||||||||||| ||||||||||| || ||||| |
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|
| T |
29752983 |
aaagtgtgcttgaatgtctcaagaaacttgtattcaagcatatatggtttgcatgttttattaatcagattatctttttttttttt |
29753068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 30621545 - 30621499
Alignment:
| Q |
229 |
gttggattgcttgctattcttgaccgctgccctcttcttgaatctct |
275 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
30621545 |
gttgggttgcttgctattcttgatggatgccctcttcttgaatctct |
30621499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 41100278 - 41100173
Alignment:
| Q |
5 |
tattgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcttctt |
104 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||||| || |||||||| ||| ||| |||| | |||| |||||| ||||||| ||||||| ||||||| |
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|
| T |
41100278 |
tattgcaaaaataatgtctgggttacgccatcttgaattgaatggatttttgcgtaattatggtagattgcttgctcttcttgatggctgccctcttctt |
41100179 |
T |
|
| Q |
105 |
gaatct |
110 |
Q |
| |
|
|||||| |
|
|
| T |
41100178 |
gaatct |
41100173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 276
Target Start/End: Complemental strand, 41100277 - 41100170
Alignment:
| Q |
165 |
attgcaaaaacaatatctggtttacgccattttaaattgaatggaattaatttctcttaactatgttggattgcttgctattcttgaccgctgccctctt |
264 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| || ||||||||||| || | | ||| |||| | ||||||||||| ||||||| ||||||||||| |
|
|
| T |
41100277 |
attgcaaaaataatgtctgggttacgccatcttgaattgaatggattt----ttgcgtaattatggtagattgcttgctcttcttgatggctgccctctt |
41100182 |
T |
|
| Q |
265 |
cttgaatctctt |
276 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41100181 |
cttgaatctctt |
41100170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 41099942 - 41099888
Alignment:
| Q |
474 |
tcttggcatgatttcttcccaaatgttgatgatgttgctttgaagtaattgtgtt |
528 |
Q |
| |
|
|||||||||| |||| || ||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
41099942 |
tcttggcatgctttcatctcaaatgttgattatgttgctttaaagtaattttgtt |
41099888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 27718359 - 27718396
Alignment:
| Q |
241 |
gctattcttgaccgctgccctcttcttgaatctcttga |
278 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
27718359 |
gctattcttgaccgatgccctcttctcgaatctcttga |
27718396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 38285719 - 38285760
Alignment:
| Q |
235 |
ttgcttgctattcttgaccgctgccctcttcttgaatctctt |
276 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
38285719 |
ttgcttgctattcttgatggatgccctcttcttgaatctctt |
38285760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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