View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13085_low_23 (Length: 256)
Name: NF13085_low_23
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_23 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 23040090 - 23040327
Alignment:
| Q |
17 |
tatatttaagatcgaaataggaaaaattatattaaatatttgccactatgtggaatactatggtcatttcatggaaggtaaatggaaaaatcagtgtcta |
116 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040090 |
tatatttaagatcgaattagcaaaaattatattaaatatttgccactatgtggaatactatggtcatttcatggaaggtaaatggaaaaatcagtgtcta |
23040189 |
T |
|
| Q |
117 |
catccattctcccccaccacaagatacccatatatacacataaaatttacaacttcataacaattggcatttctttattctataataatgataaataata |
216 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040190 |
catccattctccccctccacaagatatcc--atatacacataaaatttacaacttcataacaattggcatttctttattctataataatgataaataata |
23040287 |
T |
|
| Q |
217 |
atcaaaatattggaggggaccattgattaaatattaattt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040288 |
atcaaaatattggaggggaccattgattaaatattaattt |
23040327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University