View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_24 (Length: 255)
Name: NF13085_low_24
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34360898 - 34361131
Alignment:
| Q |
1 |
atggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcaacggatccnnnnnnnatagtttg |
100 |
Q |
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| T |
34360898 |
atggaggagactttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcattggatcctttttt-atagtttg |
34360996 |
T |
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| Q |
101 |
aaactgagaagttgcaactcttctcttttcctatctctatgtatacaatgcatgtttacttagttctgttcaagatgctagcatggactgaggcttttag |
200 |
Q |
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| T |
34360997 |
aaagtgagaagttgcaactcttcccttttcctatctctatgtatacaatgcatgtttacttagctctgttcaagatgctagcatggactgaggcttttaa |
34361096 |
T |
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| Q |
201 |
aagtccaacttctgctgcatcttatagggataata |
235 |
Q |
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| T |
34361097 |
aagtccaacttctgctgcatcttatagggataata |
34361131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 25291656 - 25291753
Alignment:
| Q |
135 |
ctctatgtatacaatgcatgtttacttagttctgttcaagatgctagcatggactgaggcttttagaagtccaacttctgctgcatcttatagggata |
232 |
Q |
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| T |
25291656 |
ctctatgtatgcgatgtatctttactttgttctgttgaagatgttagcatgaactaaggcttttagaagtccaacttttgctgcatcttatagggata |
25291753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 5584688 - 5584814
Alignment:
| Q |
1 |
atggaggaggctttatcctattattttagtatggaggcttgagcatcttacttttatgaatgaagtacttcatttcaacggatccnnnnnnnatagtttg |
100 |
Q |
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| T |
5584688 |
atggaggagactttatcctattattttagtatgaaggcttgagcatcttacttttgtgaatgaagcacttcctt-----ggtacctttttttatagtttg |
5584782 |
T |
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| Q |
101 |
aaactgagaagttgcaactcttctcttttcct |
132 |
Q |
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||| ||||||||||||||||||||| |||||| |
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| T |
5584783 |
aaagtgagaagttgcaactcttctcctttcct |
5584814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 31807808 - 31807861
Alignment:
| Q |
179 |
tagcatggactgaggcttttagaagtccaacttctgctgcatcttatagggata |
232 |
Q |
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||||||||||| |||||||||||||| |||||| |||||||||||||||||||| |
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| T |
31807808 |
tagcatggactaaggcttttagaagttcaacttttgctgcatcttatagggata |
31807861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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