View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13085_low_25 (Length: 248)

Name: NF13085_low_25
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13085_low_25
NF13085_low_25
[»] chr5 (8 HSPs)
chr5 (5-235)||(35025571-35025801)
chr5 (127-217)||(37840960-37841050)
chr5 (1-67)||(37838600-37838666)
chr5 (1-60)||(37851929-37851988)
chr5 (1-73)||(37833077-37833149)
chr5 (135-217)||(37835338-37835420)
chr5 (127-196)||(37821416-37821485)
chr5 (127-196)||(37829658-37829727)
[»] chr7 (2 HSPs)
chr7 (127-217)||(36864102-36864192)
chr7 (1-101)||(36867281-36867382)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 35025571 - 35025801
Alignment:
Q  5 cacgttggggtcaatataggtacctgcagaaatccttgtactcacagatcaaatcacactactctataagtaacaataaactaaggtcactgtccaaaag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025571 cacgttggggtcaatataggtacctgcagaaatccttgtactcacagatcaaatcacactactctataagtaacaataaactaaggtcactgtccaaaag 35025670  T
Q  105 gaagagagagcttaaggaaatattgatgagaggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaacca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025671 gaagagagagcttaaggaaatattgatgagaggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaacca 35025770  T
Q  205 ccatgtaagaaggtaaccaagtgtttcttat 235  Q
    |||||||||||||||||||||||||||||||    
T  35025771 ccatgtaagaaggtaaccaagtgtttcttat 35025801  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 37841050 - 37840960
Alignment:
Q  127 ttgatgagaggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaaccaccatgtaagaagg 217  Q
    |||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||| | |||| | |||||||||||| |||||||    
T  37841050 ttgatgagaggaggaacaaaggtccagtgagtcaagagtgacaacagagtcaacccatcagtggtaagtgcaaaaccaccatgcaagaagg 37840960  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37838600 - 37838666
Alignment:
Q  1 ctatcacgttggggtcaatataggtacctgcagaaatccttgtactcacagatcaaatcacactact 67  Q
    |||||||||||||||||||||||  ||||||||||||||||||| ||||||  ||| ||||||||||    
T  37838600 ctatcacgttggggtcaatatagacacctgcagaaatccttgtattcacagcgcaagtcacactact 37838666  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37851929 - 37851988
Alignment:
Q  1 ctatcacgttggggtcaatataggtacctgcagaaatccttgtactcacagatcaaatca 60  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||| ||||| |||||||    
T  37851929 ctatcacattggggtcaatataggcacctgcagaagtccttgtacttacagaccaaatca 37851988  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 37833077 - 37833149
Alignment:
Q  1 ctatcacgttggggtcaatataggtacctgcagaaatccttgtactcacagatcaaatcacactactctataa 73  Q
    ||||| |||||||||||||||||  |||||||||||||| || || |||||| ||||||| |||||| |||||    
T  37833077 ctatcgcgttggggtcaatatagacacctgcagaaatccctggacccacagaccaaatcatactactatataa 37833149  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 37835420 - 37835338
Alignment:
Q  135 aggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaaccaccatgtaagaagg 217  Q
    |||||| | ||| ||||||||||||| ||||||||| |   |||||||||||||| ||||||| ||||||| ||| |||||||    
T  37835420 aggaggaataaaagtccagtgtgtcatgagtgacaacagtatcaacccatcagaggtaagagtcaaaccactatgcaagaagg 37835338  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 37821485 - 37821416
Alignment:
Q  127 ttgatgagaggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagag 196  Q
    ||||| || ||||| |||||||||||  |||||||||||||||  |||||||| ||||||||| ||||||    
T  37821485 ttgattagcggaggaacaaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagag 37821416  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 37829727 - 37829658
Alignment:
Q  127 ttgatgagaggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagag 196  Q
    ||||| || ||||| |||||||||||  |||||||||||||||  |||||||| ||||||||| ||||||    
T  37829727 ttgattagcggaggaacaaaggtccaacgtgtcaagagtgacatcaaagtcaaaccatcagaggtaagag 37829658  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 36864192 - 36864102
Alignment:
Q  127 ttgatgagaggaggtacaaaggtccagtgtgtcaagagtgacaagaaagtcaacccatcagagttaagagtaaaaccaccatgtaagaagg 217  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||    
T  36864192 ttgatgagaggaggaacaaaggtccagtgagtcaagagtgacaacaaagtcaacccataagagttaagagtaaaaccaccatgcaagaagg 36864102  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 36867281 - 36867382
Alignment:
Q  1 ctatcacgttggggtcaatataggtacctgcagaaatccttgtactcacagatcaaatcacactactctataagtaacaat-aaactaaggtcactgtcc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||   || ||||| ||||||||||||    
T  36867281 ctatcacgttggggtcaatataggtacctgcagaaatccttgtactcaaagatcaaatcaccctactctataagtacggatcaaactgaggtcactgtcc 36867380  T
Q  100 aa 101  Q
    ||    
T  36867381 aa 36867382  T

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