View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13085_low_27 (Length: 243)

Name: NF13085_low_27
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13085_low_27
NF13085_low_27
[»] chr1 (2 HSPs)
chr1 (54-224)||(9088824-9088995)
chr1 (54-97)||(26711373-26711416)
[»] scaffold0121 (1 HSPs)
scaffold0121 (54-100)||(11313-11359)
[»] chr8 (1 HSPs)
chr8 (54-100)||(41043696-41043742)
[»] chr7 (3 HSPs)
chr7 (54-97)||(44655816-44655859)
chr7 (54-100)||(25494065-25494111)
chr7 (54-100)||(42167517-42167563)
[»] chr2 (2 HSPs)
chr2 (61-100)||(1519373-1519412)
chr2 (54-100)||(26694358-26694404)
[»] scaffold1317 (1 HSPs)
scaffold1317 (54-100)||(1926-1972)
[»] scaffold0169 (1 HSPs)
scaffold0169 (54-100)||(11175-11221)
[»] chr6 (2 HSPs)
chr6 (54-100)||(26680787-26680833)
chr6 (122-167)||(6925071-6925116)
[»] scaffold0004 (1 HSPs)
scaffold0004 (54-97)||(350882-350925)
[»] chr3 (1 HSPs)
chr3 (54-100)||(13991896-13991942)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 9088824 - 9088995
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgcatcttttaatannnnnnnnnnnatgaaaataggttttgatttttgtatcgatga 153  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||            |||||||||| |||||||||||||||||||||    
T  9088824 agttttataacacgttatcagcaagagtttaccaactgaggtatgcatcttttaat--ttttttttttatgaaaatagattttgatttttgtatcgatga 9088921  T
Q  154 ttaaagattatactgttaaaaattccatta---attgaaccttatagatacatctacttacaaaaccatgagtc 224  Q
    |||||||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||    
T  9088922 ttaaagattatactgttaaaaattccgttaattattgaaccttatagatacatctacttacaaaaccatgagtc 9088995  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 26711416 - 26711373
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtat 97  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||    
T  26711416 agtttcataacacgttatcagcacgagcttaccaactaaggtat 26711373  T

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Target: scaffold0121 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 11359 - 11313
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  11359 agttttataacacgttatcagtacgagcttaccaactgaggtatgca 11313  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 41043696 - 41043742
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  41043696 agtttcataacacgttatcagcacgagcttaccaactgaggtatgca 41043742  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 44655816 - 44655859
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtat 97  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  44655816 agtttcataacacgttatcagcacgagcttaccaactgaggtat 44655859  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 25494065 - 25494111
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  25494065 agtttcataacacgttatcagcacgaacttaccaactgaggtatgca 25494111  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 42167563 - 42167517
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||    
T  42167563 agtttcataacacgttatcagcacaagcttaccaactgaggtatgca 42167517  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 1519373 - 1519412
Alignment:
Q  61 taacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  1519373 taacacgttatcagcacgagcttaccaactgaggtatgca 1519412  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 26694358 - 26694404
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| |||||||||||||||||  || |||||||||||||||||||    
T  26694358 agtttcataacacgttatcagcacaagtttaccaactgaggtatgca 26694404  T

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Target: scaffold1317 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1317
Description:

Target: scaffold1317; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 1972 - 1926
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  1972 agtttcataacacgttatcagcacgaacttaccaactgaggtatgca 1926  T

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Target: scaffold0169 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 11175 - 11221
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  11175 agtttcataacacgttatcagcacgagcttaccaactgatgtatgca 11221  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 26680787 - 26680833
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||||    
T  26680787 agtttcataacacgttattagcacgagcttaccaactgaggtatgca 26680833  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 6925071 - 6925116
Alignment:
Q  122 atgaaaataggttttgatttttgtatcgatgattaaagattatact 167  Q
    ||||||||| ||||| ||||||||||||||||||| ||| ||||||    
T  6925071 atgaaaataagttttaatttttgtatcgatgattatagactatact 6925116  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 350925 - 350882
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtat 97  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||    
T  350925 agtttcataacacgttatcagcacgagcttaccaactaaggtat 350882  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 13991942 - 13991896
Alignment:
Q  54 agttttataacacgttatcagcaagagcttaccaactgaggtatgca 100  Q
    ||||| ||||||||||||||||| || |||| |||||||||||||||    
T  13991942 agtttcataacacgttatcagcacgaccttatcaactgaggtatgca 13991896  T

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