View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13085_low_29 (Length: 237)
Name: NF13085_low_29
Description: NF13085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13085_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33168768 - 33168988
Alignment:
| Q |
1 |
ctacacaagtttggcaaatggttgggatgtggaacgatattcacaaagatgttcttaccactccttcgacatcagaagccgtcttcttattactacaaca |
100 |
Q |
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| T |
33168768 |
ctacacaagtttggcaaatggttgggatgtggaacgatatacacaaagatgttcttaccactacttcgacatcagaagccgtcttcttattactacaaca |
33168867 |
T |
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| Q |
101 |
cgggaatcttaaaccatggcacgatgttaatgagctatgcgcgcaagtggtagagcgcgcccatcatttgataagaggaatggacgctggcaaatgctct |
200 |
Q |
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| T |
33168868 |
cgggaatcttaaaccatggcacgatgttaatgagctatgcgcgcaagtggtagagtgcgcccatcatttgataagaggaatggacgctggcaaatgctct |
33168967 |
T |
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| Q |
201 |
acgacagctgctcttgacatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33168968 |
acgacagctgctcttgacatc |
33168988 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 22956281 - 22956330
Alignment:
| Q |
108 |
cttaaaccatggcacgatgttaatgagctatgcgcgcaagtggtagagcg |
157 |
Q |
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|||||| ||||||| |||||||||||||||||| | |||||||||||||| |
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| T |
22956281 |
cttaaatcatggcaagatgttaatgagctatgcacacaagtggtagagcg |
22956330 |
T |
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